Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88208510|gb|CI208359.1|CI208359EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|86532508|gb|CI172714.1|CI172714EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88480668|gb|CI417939.1|CI417939EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|38473664|gb|CF957796.1|CF957796EST: GTACTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAN GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GT-CTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88509401|gb|CI436907.1|CI436907EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCANCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|33660490|gb|CF291457.1|CF291457EST: GTCTCGCCGCCGGCATGGCCATCGGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGTGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GTCTCGCCGCCGGCATGGCCATC-GGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88480063|gb|CI417334.1|CI417334EST: CGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: CGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|29686032|gb|CB682307.1|CB682307EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|25799453|gb|CA755414.1|CA755414EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|86601472|gb|CI253800.1|CI253800EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88282552|gb|CI403948.1|CI403948EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88226731|gb|CI224716.1|CI224716EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|38474557|gb|CF958690.1|CF958690EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAG
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAG
EST:
gi|88537736|gb|CI466709.1|CI466709EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88240943|gb|CI240792.1|CI240792EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88212647|gb|CI212287.1|CI212287EST: GGTCTCGCCGCCGGCATGGCNATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|86420321|gb|CI056310.1|CI056310EST: GCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|88538246|gb|CI467260.1|CI467260EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|33660491|gb|CF291458.1|CF291458EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGTGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
EST:
gi|27578035|gb|CB000730.1|CB000730EST: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAG GGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
genomic: GGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
49 (upstream exon),
29 (downstream exon)
Score:
4TCTTCGACGGTTACGCCCACCTCTCCTCCGGTCTCGCCTGCGGCCTCGCCGGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccc ... tcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTATCTTTGCAGAAGCTCTTGCTCTGTATGGCCTGATTGTTGGTATCATCCTC
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