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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatctaattaattagcacttgctctatgttacctcacttgttcaacctttttttttttttgccacaatccaagctgagcattgcttgtttcttttgaagGTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAACCTTTACTTGAATGCACTAGATGACGATGGTCTCCCAATCTACGACGGGG

Basic information

species Oryza sativa
transcript LOC_Os05g01470.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01470.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G098039_T01 (Zea mays), 3'ss of exon 2
gtatctaattaattagcacttgctctatgttacctcacttgtt--caacctttttttttttttgccacaatccaagctgagcattgcttgtt---tcttttgaagGTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAACCTTTACTTGAATGCACTAGATGACGATGGTCTCCCAATCTACGACGGGG
   |  | | |  | |   |  | ||  || |  | | |||||  |     |||||| ||| ||    ||||||| ||||  |||  ||      |  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||| |||||||
---tgcattcagcttggcatgaccct--gtcattttaattgttttctgggcttttttatttctgttggaatccaaactgacaattttttaacacattctttgaagGTCTATGGCCTGGATATAAACCCAAGAGCTGTGAAGATTGCATGGATAAACCTGTACTTGAACGCATTAGATGACGACGGTCTCCCGATCTATGACGGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630290|gb|CB635299.1|CB635299
EST:     GCAATGGTTGGATATCCATTGCACTTGCAGAAAAGTGGTCCCCTTCGAAG                         GTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAAC
genomic: GCAATGGTTGGATATCCATTGCACTTGCAGAAAAGTGGTCCCCTTCGAAGgttggcatct ... tcttttgaagGTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctttttttttttttgccacaatccaagctgagcattgcttgtttcttttgaagGTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAACCTTTACTTGAATGCACTAGATGACGATGGTCTCCCAATCTACGACGGGG
                                    ttgcttgtttctttt  CT-rich tract
     ttttttttttt  TA-rich tract