1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtatatcttgttgagctcttttgcttctccttcgaattacttactctattacggtactgtgctcatctgtatactgtcttatatatgctttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAAGTTGCTTTTGCATCAGAGGGACTTAAAGATGCTCAGCAAACG
species | Oryza sativa |
transcript | LOC_Os05g01250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88578356|gb|CI687279.1|CI687279
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|33655394|gb|CF278008.1|CF278008
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|27576216|gb|CA998910.1|CA998910
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88436415|gb|CI691129.1|CI691129
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88406674|gb|CI603868.1|CI603868
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: AGGAGGCCATCAAGGCACCGCGCCATGAGGGT-CTCAAGCAGCGCAGAAT GTACGAAGGGCAGAGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88327316|gb|CI645093.1|CI645093
genomic: AGGAGGCCATCAAGGCA-CGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCCAAACATATAACCTTGACCEST: gi|88589535|gb|CI705424.1|CI705424
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACC-AAACATATAACCTTGACC
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|66920747|gb|CX107595.1|CX107595
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|33662787|gb|CF293754.1|CF293754
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88425481|gb|CI567201.1|CI567201
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTACTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATTACCTTGAEST: gi|88310981|gb|CI657894.1|CI657894
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|38483033|gb|CF966835.1|CF966835
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88331043|gb|CI638451.1|CI638451
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|87006073|gb|CI289490.1|CI289490
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|5003512|gb|AU068661.1|AU068661
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|27576887|gb|CA999581.1|CA999581
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|33823135|gb|CF337370.1|CF337370
genomic: CCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTATAACCAAACATATAACCTTGACCAEST: gi|117224782|gb|CT845909.1|CT845909
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|88362605|gb|CI608754.1|CI608754
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAEST: gi|218491828|gb|FG966677.1|FG966677
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
EST: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAAT GTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcc ... ttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCA
tctattacggtactgtgctcatctgtatactgtcttatatatgctttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAAGTTGCTTTTGCATCAGAGGGACTTAAAGATGCTCAGCAAACG
tgctttcct CT-rich tract
tcttatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatatcttgttgagctcttttgcttctccttcgaattacttactctattacggtactgtgctcatctgtatactgtcttatatatgctttcctgacagGTACGAAGGGCAGCGTGACATGCTGTACAACCAAACATATAACCTTGACCAAGTTGCTTTTGCATCAGAGGGACTTAAAGATGCTCAGCAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -cttgttg
- - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgct