1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atttgttgacgcaactttttgtttgattacccatatatttttgtggtaaattctctaagatcatctaataatccttttggtggaaacaactatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGCAAAGGTTAGCAATTTGCTTGGCTGTTGCTGCGAAGGTGACGAGAGATTGCTTGTTGCAGAATACATG
species | Oryza sativa |
transcript | LOC_Os04g58750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTG GAAGAAGCTAAATCAGTTGGACAACTTCGGAGCAAAAGGTTAGCAAATTTGEST: gi|33675914|gb|CF304153.1|CF304153
genomic: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTGgtatcctatt ... tatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGC-AAAGGTTAGC-AATTTG
EST: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTG GAAGAAGCTAAATCAGTTGGACAACTTCGGAGCAAAAGGTTAGCAAATTTGEST: gi|29624788|gb|CB629799.1|CB629799
genomic: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTGgtatcctatt ... tatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGC-AAAGGTTAGC-AATTTG
EST: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTG GAAGAAGCTAAATCAGTTGGACAACTCCGGAGCAAAAGGTTAGCAAATTTGEST: gi|58669011|gb|CK057697.1|CK057697
genomic: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTGgtatcctatt ... tatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGC-AAAGGTTAGC-AATTTG
EST: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTG GAAGAAGCTAAATCAGTTGGACAACTCCGGAGCAAAAGGTTAGCAAATTTG
genomic: CTGTGAAGAGGTTCAACCGTTCTGCATGGCCTGACCCGCGGCAGTTCTTGgtatcctatt ... tatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGCAAA-GGTTAGCAA-TTTG
gtaaattctctaagatcatctaataatccttttggtggaaacaactatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGCAAAGGTTAGCAATTTGCTTGGCTGTTGCTGCGAAGGTGACGAGAGATTGCTTGTTGCAGAATACATG
atctaat putative branch site (score: 3)
atctaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgttgacgcaactttttgtttgattacccatatatttttgtggtaaattctctaagatcatctaataatccttttggtggaaacaactatgcttcagGAAGAAGCTAAATCAGTTGGACAACTTCGGAGCAAAGGTTAGCAATTTGCTTGGCTGTTGCTGCGAAGGTGACGAGAGATTGCTTGTTGCAGAATACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC