1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gaaacgccaactaaaacccgtacttgcgtgatcagtcaaaatccttctgggatggaatttcttctcatgtgtcatgactcgatgattccgcaccttgcagGAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCT
species | Oryza sativa |
transcript | LOC_Os04g58700.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCCCT GAAGCTGTCAAACTCGTCGCTGEST: gi|58664033|gb|CK052719.1|CK052719
genomic: GACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCCCTgtaagaaacc ... caccttgcagGAAGCTGTCAAACTCGTCGCTG
EST: GACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCCCT GAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACAEST: gi|58661808|gb|CK050488.1|CK050488
genomic: GACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCCCTgtaagaaacc ... caccttgcagGAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACA
EST: GACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCGCT GAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACA
genomic: GACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCCCTgtaagaaacc ... caccttgcagGAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACA
tctgggatggaatttcttctcatgtgtcatgactcgatgattccgcaccttgcagGAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCT
aatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacgccaactaaaacccgtacttgcgtgatcagtcaaaatccttctgggatggaatttcttctcatgtgtcatgactcgatgattccgcaccttgcagGAAGCTGTCAAACTCGTCGCTGAAGGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT