Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtgctgactacttttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC

Basic information

species Oryza sativa
transcript LOC_Os04g57220.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G102471_T03 (Zea mays), 3'ss of exon 1
cctgcttaatcttgaatcactttcta----cattatttaaactgaactc--tatgtccaaaatttgtt-ttactcatct-cgtgctg-acta-cttttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
           |  |||||  |||||    ||  ||| |  ||  | |   | |    || ||||||  | ||  ||||  ||| || |||| || || |   |||||||||||||| |||||||||||||||||||||||||| || || ||||| || || |||||||||||||| |||||||||||||||||||||||||| |||||
----------atccaatcatattctaaagccaccattgagtctcgatttgttttacttaacatttgtagtcacctatctgtgtgttgcactaactattcttaattgtcagGTCCTGTTGGTGAGGACATGTTCCATTGGCAAGCGACCATCATGGGGCCTTCGGACAGCCCATTTGCAGGTGGGGTATTCTTGGTGAACATTCACTTCCC

upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G17800.1 (Glycine max), 3'ss of exon 1
cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtgc-tgactactt---ttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
        | |   ||| | | | |   |  || ||||  | |   |  |    | | |  |||  | |    |||  ||| || ||   || | | |  ||||| || |||| | | ||||||||||||||||||||||| |||||||| ||   ||| |||||||||||||| || || ||  | |||   ||||| |||||
----taggaaccctaatgattctatgtttgcttaaaacctatcagaacttttggattgttctttgtttagtcagtgtatgaataattgaattttttatgttcagGCCCAGTGGTTAATGACATGTTCCATTGGCAAGCTACAATTATGGGTCCTGTAGATAGCCCATTTGCTGGCGGTGTGTTTATTGTGTCAATTCACTTCCC

upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G18310.1 (Glycine max), 3'ss of exon 2
cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtg---ctgactacttttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
      |||   || |  ||  | |  | |||| ||  | | ||    ||     || | |   |  | | || ||   || |    ||   |   |    ||| ||||| ||||| |||||||| |||||||||||||| |||||||| ||  | ||||| || | ||||||||| |||||| |||||| |||||| |||||
---atataaaaatggaaaacaatatgtaatattgaatattaccttgtagttatgtatctatgggaagcttatcatgaatcttatgtattccattcttgagtagGCCCTGTTGGTGATGACATGTTTCATTGGCAAGCTACAATTATGGGTCCAACTGACAGTCCTTATGCTGGTGGTGTATTCCTGGTGACCATTCACTTCCC

upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G35600.1 (Glycine max), 3'ss of exon 1
cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtgc-tgactactt---ttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
      ||||            |     |  || ||||     |  |    | || | |  | |  |||    |||| ||| || ||   || | | |  ||||| || |||| ||| ||||||||||||||||||||||| |||||||| ||  |||| || ||||||||||| || |||||  | |||   ||||| || ||
----aataataaaatgatgtcattcgtttgcttaaaacctgtttgaaccatcgaactgttctctgttcaatcagtgcatgaataattgatttttttatattcagGCCCAGTGGCTGATGACATGTTCCATTGGCAAGCTACAATTATGGGTCCTGCAGATAGTCCATTTGCTGGAGGTGTATTTCTTGTGTCAATTCACTTTCC

upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G17760.1 (Glycine max), 3'ss of exon 1
cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtgc-tgactactt---ttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
       || |   |||   | |     |  || ||||    |   |  |  | | | |  |||| |||    | || |||  | ||   || | | |  ||||| || |||  | | ||||||||||||||||||||||| |||||||| ||  || | |||||||||||||| || || ||  | |||   ||||| || ||
----aggaacccccaatgcttctacgtttgcttaaaacctgtcaaaacttttagattattctttattcaatgagggcatgaagaattgaattttttatgttcagGCCCAGTGACTAATGACATGTTCCATTGGCAAGCTACAATTATGGGCCCTGCAAATAGCCCATTTGCTGGAGGTGTGTTTCTTGTGTCAATTCACTTTCC

upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA16G17740.1 (Glycine max), 3'ss of exon 1
---cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtgctgactacttttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
     || ||  |   | ||      |   || |||  |  |   ||  |   | |  |    ||||     | | | | |    | |||| | | |  |||||||| |||| | | || |||||||||||||||||||| |||||||| ||   ||| |||||||||||||| || || ||  | |||   ||||| |||||
taaaatgattccttgaggattggaaccacaatgattctatgtttgcttaaaacctatcaaaacttttgagtgtat-gagttatggaattttttatat--tcagGTCCAGTGGCTAATGATATGTTCCATTGGCAAGCTACAATTATGGGCCCTATAGATAGCCCATTTGCTGGAGGTGTGTTTCTTGTGTCAATTCACTTCCC

upper sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv19s0015g01190.t01 (Vitis vinifera), 3'ss of exon 2
cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcg----tgctgactacttttg--tctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
     |  ||    |||   ||   |  ||  |   | |    |||  | | |||||    |||    ||  ||    |  | |  | ||||    |||||   ||| ||||| ||||| ||||||||||| |||||||| ||||||||||| ||    |||||||| || ||||| || || ||  |||||  ||| || |||||
----ttgcatgccaaattgattataattttgctgttagtc--ttcttagcctaaaataatctttgtagataccggatataattaaaatttttaaacctgtttatagGCCCTGTTGGTGATGACATGTTCCACTGGCAAGCAACTATTATGGGTCCAAGTGACAGCCCTTTCGCTGGAGGTGTGTTTCTGGTGTCCATCCACTTCCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86601436|gb|CI253764.1|CI253764
EST:     GAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|86592570|gb|CI253251.1|CI253251
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218497164|gb|FG952513.1|FG952513
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|38474282|gb|CF958414.1|CF958414
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|3763269|gb|AU030021.1|AU030021
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTTATTATGGGACCC
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTAC-TATTATGGGACCC
EST: gi|4880425|gb|AU064724.1|AU064724
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218489730|gb|FG954304.1|FG954304
EST:     CCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: CCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|8528005|gb|AU092820.1|AU092820
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|58664201|gb|CK052887.1|CK052887
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|58599461|gb|CK009989.1|CK009989
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218504761|gb|FG960866.1|FG960866
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33658858|gb|CF281471.1|CF281471
EST:     TCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: TCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218480799|gb|FG956054.1|FG956054
EST:     CCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: CCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218491681|gb|FG954119.1|FG954119
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218503710|gb|FG953300.1|FG953300
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|87026452|gb|CI252406.1|CI252406
EST:     ACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: ACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|86601317|gb|CI251691.1|CI251691
EST:     TGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: TGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|2311899|gb|C28054.1|C28054
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33654973|gb|CF277587.1|CF277587
EST:     CATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: CATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|1632631|gb|C20360.1|C20360
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|58593797|gb|CF992105.1|CF992105
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|86503825|gb|CI146458.1|CI146458
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|87013213|gb|CI265311.1|CI265311
EST:     GAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33659441|gb|CF282054.1|CF282054
EST:     ATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: ATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33664130|gb|CF295097.1|CF295097
EST:     ATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: ATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|38470864|gb|CF954995.1|CF954995
EST:     CTCCCACCTCATGCAGCGCAG                         GT-CTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: CTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|89165136|gb|CI255193.1|CI255193
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218491487|gb|FG957666.1|FG957666
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGA-GACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|8527887|gb|AU092702.1|AU092702
EST:     AAGGAGTTGAAGGACCTGCAGAAGGACCCCTCCCACTTCATGCAGCGCAG                         GTCNTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTAATGGGACCN
genomic: AAGGAGTTGAAGGACCTGCAGAAGGA-CCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATT-ATGGGACCC
EST: gi|218488112|gb|FG949877.1|FG949877
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33655214|gb|CF277828.1|CF277828
EST:     CATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: CATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|87011443|gb|CI279352.1|CI279352
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218478659|gb|FG955767.1|FG955767
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|29680725|gb|CB677000.1|CB677000
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|4715183|gb|AU056300.1|AU056300
EST:     GGAAGTTGAAGG-CCNTGCAGAAGGCCCCTCCCACCTTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GG-AGTTGAAGGACC-TGCAGAAGGACCCTCCCACC-TCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|58586642|gb|CF984950.1|CF984950
EST:     CCCACCTCATGCAGCGCAG                         GTCCGGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: CCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218499804|gb|FG955151.1|FG955151
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|86599825|gb|CI255987.1|CI255987
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33664871|gb|CF295838.1|CF295838
EST:     TCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: TCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|87018738|gb|CI254446.1|CI254446
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACGTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218482001|gb|FG956573.1|FG956573
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|58600807|gb|CK011335.1|CK011335
EST:     GTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218500729|gb|FG953513.1|FG953513
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218488717|gb|FG953594.1|FG953594
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33655859|gb|CF278473.1|CF278473
EST:     TCAT-CAGCGCAG                         GTCCTGTGGGTGAGGACATGTACCATTGGCAAGCTACTATTATGGGACCCT
genomic: TCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33661635|gb|CF292602.1|CF292602
EST:     ATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: ATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|87024011|gb|CI254575.1|CI254575
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACGTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|218478160|gb|FG952605.1|FG952605
EST:     GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: GAAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
EST: gi|33655402|gb|CF278016.1|CF278016
EST:     AAGGAGTTGAAGGACCTGCAGAAGGACCCTCCCCACCTCATGCAGCGCAG                         GTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT
genomic: AAGGAGTTGAAGGACCTGCAGAAGGACCCT-CCCACCTCATGCAGCGCAGgtgatttgat ... ctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtccaaaatttgttttactcatctcgtgctgactacttttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC
                             tgctgac  putative branch site (score: 2)
                                      cttttgtct  putative PPT
       aaaatttgttttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctgcttaatcttgaatcactttctacattatttaaactgaactctatgtccaaaatttgttttactcatctcgtgctgactacttttgtctgttgtcagGTCCTGTGGGTGAGGACATGTTCCATTGGCAAGCTACTATTATGGGACCCTCAGACAGCCCATTTGCTGGTGGGGTATTCTTGGTGAACATTCATTTCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG