1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgggaaatgtatgagtatgacatattttaagggcagcaaatttcgattcaaaatagcaaaatgttgactgcagtcgctaatttattccatgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGAAGCCATAGCCAATGCCCTGAAGGATTCTGACCTTGTCTTCATAACGGC
species | Oryza sativa |
transcript | LOC_Os04g56970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG GTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGEST: gi|58688695|gb|CK077382.1|CK077382
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG GTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGEST: gi|29655620|gb|CB651895.1|CB651895
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCATTTAACTCGTGGACTAC GTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGEST: gi|86885639|gb|CI309766.1|CI309766
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG GTACTGGTGGAAGTCCTAATTTGGGAGAGCAAGCTGCTGEST: gi|88316287|gb|CI621526.1|CI621526
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTG
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG GTACTGGTGGAAATC-TAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGEST: gi|29655650|gb|CB651925.1|CB651925
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG GTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGEST: gi|29655649|gb|CB651924.1|CB651924
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
EST: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAG GTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
genomic: GCAAGCGCAATACCCGCTACAAATTGGAGAGCAGTTAACTCGTGGACTAGgtaatatttg ... atgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAG
cgattcaaaatagcaaaatgttgactgcagtcgctaatttattccatgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGAAGCCATAGCCAATGCCCTGAAGGATTCTGACCTTGTCTTCATAACGGC
cgctaat putative branch site (score: 11)
taatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgggaaatgtatgagtatgacatattttaagggcagcaaatttcgattcaaaatagcaaaatgttgactgcagtcgctaatttattccatgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGAAGCCATAGCCAATGCCCTGAAGGATTCTGACCTTGTCTTCATAACGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - atgtatg
- - - - - - - - - - - - - - - - - -cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactgca