Sequence
atgc intronic sequence ATGC exonic sequence...tagggcacaatgctttaaattgaactagaagtgtggatataccaagctcttgagcttattttaggaaaaataaatgctaaacatacagttcattttatagGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAG
Basic information
| species | Oryza sativa |
| transcript | LOC_Os04g56450.1 |
| intron # | 2 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os04g56450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G056572_T02 (Zea mays), 3'ss of exon 2
tagggcacaatgctttaaattgaactagaagtgtggatataccaagctcttgagcttattttaggaaaaataaatgctaa-------acatacagttcattt-tatagGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAG
| | | | || | || | | || | ||||| | | | || | | | | | || | | || ||| ||| | ||||||||||||||||||| ||||| |||||||||||| | || || |||| ||||| | || |||||||||||||||||||| || ||||| || ||||
--gtacggatttctcttaagccagcatgatttagttatataatttgagcgcaactttcatctgtagccagttctttctgatcccatggcctatggtttgtttgtgtagGTCATGGTGGTGCTAAGGTAGCAGAGTATGTTAAAGAAAACCTGTTCAACAATCTTGTTAGTCATCCAAAGTTCATCAGTGATACTAAAGTCGCTATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|701023|gb|D47314.1|D47314EST: AATTGACTCTGTTGATGGGCAGATTATTGGTCTTTTTGGAGTTTTTGATG GTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTC
genomic: AATTGACTCTGTTGATGGGCAGATTATTGGTCTTTTTGGAGTTTTTGATGgtatgtatga ... cattttatagGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctcttgagcttattttaggaaaaataaatgctaaacatacagttcattttatagGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAG
tgctaaa putative branch site (score: 2)
ttcatttt putative PPT
ttattttaggaaaaat TA-rich tract
