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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccagaccggccgatcaccactccgatccctgtatttttgatgaattgatcgggaacgaacgaactgtgtgcagCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACC

Basic information

species Oryza sativa
transcript LOC_Os04g55740.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g55740.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G443885_T01 (Zea mays), 3'ss of exon 3
--------------------------------------------gtaagcaccagaccggccgatcaccactccgatccctgtatttttgatgaattgatcgggaa----cgaacgaactgtgtgcagCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACC
                                            |  |||      ||   ||||  |||  |       || | |  |||  |  | || |        |    | |     ||||||| ||||| || ||||||||||| ||||| |||||||| |||||||||||||||| ||||||||  |||||||||||||||||  |||||||    ||||
gtaagcacgacatgcacaaagaccaagcaagactagctgcatatgctagcttttttccattcgatttccatgcatggtggtg-agtggtgacaagctaattgcaccatctcctctgcatgcaatgcagCTCGGCGGTCCTACGTGGGACGTGGAGCTCGGCCGGCGGGACGGGACGACGGCGAACCTGGACGACGCGAACAACGACCTCCCAGCGCCGACCCTGGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actccgatccctgtatttttgatgaattgatcgggaacgaacgaactgtgtgcagCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACC
                        aattgat  putative branch site (score: 4)
             tatttttgatgaatt  TA-rich tract