1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgtatatgtttctcttgtaggtaccagtctttacacatgctgcataaatatgctcttttagtcaaatctggccattaattctgtgtctataacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTG
species | Oryza sativa |
transcript | LOC_Os04g52710.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGCCGATTGCAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACEST: gi|29658246|gb|CB654521.1|CB654521
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
EST: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGAT CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACEST: gi|38471849|gb|CF955980.1|CF955980
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
EST: GTGTTGCCGATTGCAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT CAACTGGCATCTCAEST: gi|29676398|gb|CB672673.1|CB672673
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCA
EST: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGAT CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACEST: gi|218497506|gb|FG955300.1|FG955300
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
EST: GTGTTGCCGATTGCAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
taaatatgctcttttagtcaaatctggccattaattctgtgtctataacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTG
ctataac putative branch site (score: 3)
attaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatatgtttctcttgtaggtaccagtctttacacatgctgcataaatatgctcttttagtcaaatctggccattaattctgtgtctataacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGACACTCACATCGATGACCATCACTCAAACGAAGACATCGCTTTGGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA