1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggaaccacttaagttgtattgttataatgtcactgactatagatgatgatctggttgtatgttgatgctaatgttacaaatctgttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG
species | Oryza sativa |
transcript | LOC_Os04g51630.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGG TATCAATGCCATGCACCCAAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTEST: gi|29618050|gb|CB623062.1|CB623062
genomic: TTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGGgtaaggaacc ... ttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTT
EST: TTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGG TATCAATGCCATGCACCCAAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTEST: gi|29641909|gb|CB646916.1|CB646916
genomic: TTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGGgtaaggaacc ... ttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTT
EST: TTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGG TATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTT
genomic: TTCTATGTCAGCCCTGAGGAAAAGTTGCTGTTTGTGGTCCGTATCCGTGGgtaaggaacc ... ttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTT
tagatgatgatctggttgtatgttgatgctaatgttacaaatctgttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG
taatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaaccacttaagttgtattgttataatgtcactgactatagatgatgatctggttgtatgttgatgctaatgttacaaatctgttgactgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC