1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgctagttatgtttccctgaggattctgctactacctgtcattttttcttgacatctctctctcacgcacatttcattctgcagcatctttcatctttcatgacttgttttcacttctcagttcatttgtgatgctctgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCAGAAGACGCGCTGTCCAAGTGTCTAGACAGAAGCATGTACATGGCCACTA
species | Oryza sativa |
transcript | LOC_Os04g51400.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAG GAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCAEST: gi|12622915|gb|AU173128.1|AU173128
genomic: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAGgtatgctagt ... tgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCA
EST: CGGCATNTCTTATGAG GAATTGCTAGCATTGGGAGATAGAATTGGCCCCGTAAGCACTGGCCTTTCAEST: gi|86502403|gb|CI145036.1|CI145036
genomic: CGGCATGTCTTATGAGgtatgctagt ... tgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCA
EST: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAG GAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCAEST: gi|11173166|gb|AU164645.1|AU164645
genomic: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAGgtatgctagt ... tgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCA
EST: ATGATCGNTACAGAGGGATGAGAATGGNCATTGACGGCATGTCTTATGCG GAATTGCTAGCATNGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCAEST: gi|29682221|gb|CB678496.1|CB678496
genomic: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAGgtatgctagt ... tgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCA
EST: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAG GAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCA
genomic: ATGATCGGTACAGAGGGATGAGAATGGACATTGACGGCATGTCTTATGAGgtatgctagt ... tgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCA
atctttcatgacttgttttcacttctcagttcatttgtgatgctctgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCAGAAGACGCGCTGTCCAAGTGTCTAGACAGAAGCATGTACATGGCCACTA
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctagttatgtttccctgaggattctgctactacctgtcattttttcttgacatctctctctcacgcacatttcattctgcagcatctttcatctttcatgacttgttttcacttctcagttcatttgtgatgctctgcactgtagGAATTGCTAGCATTGGGAGATAGAATTGGCACCGTAAGCACTGGCCTTTCAGAAGACGCGCTGTCCAAGTGTCTAGACAGAAGCATGTACATGGCCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC