Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttcctttgacatcccctgttctaaatcccaggaatgttgaacattgtttagcatcccattgaattatatgttcgttttttctttattgtggtgctcagGTTCGTAGTCAAGGAAATGCTTGGCCAAGGAACGTTCGGTCAGGTTGTCAAATGCTTGGACACTGAAACCAATGATTATGTTGCTGTGAAGGTTATTAAA

Basic information

species Oryza sativa
transcript LOC_Os04g51370.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51370.2 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ11527 (Selaginella moellendorffii), 3'ss of exon 1
ctttcctttgacatcccctgttctaaatcccaggaatgttgaacattgtttagcatcccattgaattatatgttcgttttttctttattgtggtgctcagGTTCGTAGTCAAGGAAATGCTTGGCCAAGGAACGTTCGGTCAGGTTGTCAAATGCTTGGACACTGAAACCAATGATTATGTTGCTGTGAAGGTTATTAAA
                                               ||||    |   |||| | | |  |  ||   |     | || |||    ||| |  || ||||||||||||||||||||||| || || ||||||||||| ||||||| |  |  |      ||||  || ||||| ||||| || || || 
-----------------------------------------------gtttg---tggaattggagtttgagcgcgagctgagcctgttttgg----cagATATGTTGTCAAGGAAATGCTTGGCCAAGGGACATTTGGTCAGGTTGTAAAATGCTGGTCCGATCGCGAGAATGGCTACGTTGCCGTGAAAGTGATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671029|gb|CK059715.1|CK059715
EST:     CTCATATTGTATGTCAACTTGGAATTGGTCAACAGGACATCAAATCGGAG                         GTTCGTAGTCAAGGAAATGCTTGGCCAAGGAACGTTCGGTCAGGTTGTCAA
genomic: CTCATATTGTATGTCAACTTGGAATTGGTCAACAGGACATCAAATCGGAGgtttaacttt ... tggtgctcagGTTCGTAGTCAAGGAAATGCTTGGCCAAGGAACGTTCGGTCAGGTTGTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttagcatcccattgaattatatgttcgttttttctttattgtggtgctcagGTTCGTAGTCAAGGAAATGCTTGGCCAAGGAACGTTCGGTCAGGTTGTCAAATGCTTGGACACTGAAACCAATGATTATGTTGCTGTGAAGGTTATTAAA
                               ttttttctttattgt  CT-rich tract
              attgaattatatgtt  TA-rich tract