1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatcactacttattcttctgtgtgtgtgatgcttgtcttttcaggttgcactatgtaattggcataagcttaactaatccttttatttttgcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAG
species | Oryza sativa |
transcript | LOC_Os04g48770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88315253|gb|CI611917.1|CI611917
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88722801|gb|CI746311.1|CI746311
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88386212|gb|CI572829.1|CI572829
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88368046|gb|CI572767.1|CI572767
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88312012|gb|CI580177.1|CI580177
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88386211|gb|CI572828.1|CI572828
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88361848|gb|CI682012.1|CI682012
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTCGAGCAAACATACCGTEST: gi|88393733|gb|CI621228.1|CI621228
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|58588357|gb|CF986665.1|CF986665
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88738677|gb|CI762185.1|CI762185
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGGEST: gi|88582268|gb|CI699664.1|CI699664
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCG-
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGNAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|58595974|gb|CK006502.1|CK006502
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88359976|gb|CI679746.1|CI679746
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGAACTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88335570|gb|CI642794.1|CI642794
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88314800|gb|CI608259.1|CI608259
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88349807|gb|CI634342.1|CI634342
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|88330242|gb|CI658551.1|CI658551
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTNAC-ATGGGAGTAACTTTGAGCAAACATACCGEST: gi|58689043|gb|CK077730.1|CK077730
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCT-ACCATGGGAGTAACTTTGAGCAAACATACCG
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTEST: gi|14191699|gb|AU183910.1|AU183910
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
EST: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATG TTTTATGCAGGATATGGNTACCATGGGAGTAACTTTGAGCAAACATACCGT
genomic: GTTACGAGCCTGGGAGAAGTTGAGGCAAAGACCTGCAGCAAAATGgtatgcatca ... gcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGT
ttgcactatgtaattggcataagcttaactaatccttttatttttgcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAG
aactaat putative branch site (score: 13)
tccttttatttttgct CT-rich tract
ttaactaatcctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcactacttattcttctgtgtgtgtgatgcttgtcttttcaggttgcactatgtaattggcataagcttaactaatccttttatttttgcttctgcagTTTTATGCAGGATATGGCTACCATGGGAGTAACTTTGAGCAAACATACCGTTGTTATCCAGCATCTTTCTTTGACAAG
- - - - - - - - -ctgtgtg
- - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - gttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcata