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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcgcccccacccacgaacaacgattcgttgcattctcctgtgcttggctgcttgctttggctcatgcatggatactggctcatcggtgcagGATGTTCAAGGAATGCCCCCACCCAGACGAGAAGCAGCGCGCCGAGCTGAGCAAGCGGCTCGGCCTCGAACCCCGGCAGGTCAAGTTCTGGTTCCAGAAT

Basic information

species Oryza sativa
transcript LOC_Os04g48070.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g48070.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AC235534.1_FGT007 (Zea mays), 3'ss of exon 2
gtaagcgcgcccccacccacgaacaacgattcgttgcattctcctgtgcttggctgcttgctttggctcatgcatggatactggctcatcggtgcagGATGTTCAAGGAATGCCCCCACCCAGACGAGAAGCAGCGCGCCGAGCTGAGCAAGCGGCTCGGCCTCGAACCCCGGCAGGTCAAGTTCTGGTTCCAGAAT
      | |  | | ||| ||     |||||||| |  || || ||  ||||  ||   ||    ||||| || | |||  | |      |  |||||||||||||||||| || |||||| |||||||||||||||||  ||||||||| || ||| ||||| || || |||||||||||||||||||||||||| 
------gtgagcgcccccgcgtggttcgattcgtcgtgttttcttgaacttgcgtgaaggcccgcgctcacgcgtcgatcgttgt-----gccgcagGATGTTCAAGGAATTCCACCACCCGGACGAGAAGCAGCGCGCGCAGCTGAGCAGGCAGCTGGGCCTGGACCCGCGGCAGGTCAAGTTCTGGTTCCAGAAC