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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgttacttgcaaaccttttggttttgttttcgtgtacgaaagtttttgttcgggagaagaccagaattatacactgttcatgtttggtggcaataaagctcgcctttttatggtccggcagATGCCAAGGCCGTCACGGAGCCGAATCGGTATCTGATGATCGCAACGAGCGGCGGCCTGAACCAGCAGCGAACAGGG

Basic information

species Oryza sativa
transcript LOC_Os04g47520.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g47520.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G142664_T01 (Zea mays), 3'ss of exon 3
gtatgcgttacttgcaaaccttttggttttgttttcgtgtacgaaagtttttgttcgggagaagaccagaattatacactgttcatgtttggtggcaat---------aaagctcgc----------ctttttatggtccggcagATGCCAAGGCCGTCACGGAGCCGAATCGGTATCTGATGATCGCAACGAGCGGCGGCCTGAACCAGCAGCGAACAGGG
||| ||||| || || | | |  || |||  |||  || ||||  |   ||     ||  |||||   || | || |   |    ||||||||| |||          ||||||| |          || | |||||| ||  ||||||| |||| || ||  || || | || ||  |||||||||| ||||||||||| ||||| |||||||||||||||
gtacgcgttcctcgcga-catggtgatttc-tttctgtctacgttaccgttccgctggtggaagagttgattgatgctgcgcgtgtgtttggtgtcaaattgtcaacaaaagctcacattgtttttcctctatatggttcgatagATGCCGAGGCTGTGACCAAGTCGGACCGTTACTTGATGATCGCGACGAGCGGCGGACTGAATCAGCAGCGAACAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatacactgttcatgtttggtggcaataaagctcgcctttttatggtccggcagATGCCAAGGCCGTCACGGAGCCGAATCGGTATCTGATGATCGCAACGAGCGGCGGCCTGAACCAGCAGCGAACAGGG
                                      tttttat  TA-rich tract