1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagtgtcacaagcaaaaaaaaaaggggggggcttatttttcatttgtggtaaccttaccagaaatattttactggcagGTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCTCTAAACAAAGAGAACACAAATCTTCTACTGTCTACTGCTGATAAGCAGC
species | Oryza sativa |
transcript | LOC_Os04g46892.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTATGCTTTGTTGATCTGCATAAACTTAAG GTATTTCATACAATGGACCTGGGGAAA-GCCAGGACGTCACAGCAATCGCTEST: gi|58688147|gb|CK076834.1|CK076834
genomic: TGTATGCTTTGTTGATCTGCATAAACTTAAGgttagtgtca ... ttactggcagGTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCT
EST: AATCTGTTCATGTGCCTTCTGTATGCTTTGTTGATCTGCATAAACTTAAG GTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCTEST: gi|88722059|gb|CI745386.1|CI745386
genomic: AATCTGTTCATGTGCCTTCTGTATGCTTTGTTGATCTGCATAAACTTAAGgttagtgtca ... ttactggcagGTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCT
EST: AATCTGTTCATGTGCCTTCTGTGTGCTTTGTTGATCTGCATAAACTTAAG GTATTTCATACAATGGAGCTGGGGAAAG
genomic: AATCTGTTCATGTGCCTTCTGTATGCTTTGTTGATCTGCATAAACTTAAGgttagtgtca ... ttactggcagGTATTTCATACAATGGAGCTGGGGAAAG
ggggggggcttatttttcatttgtggtaaccttaccagaaatattttactggcagGTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCTCTAAACAAAGAGAACACAAATCTTCTACTGTCTACTGCTGATAAGCAGC
ttttact CT-rich tract
ttatttttcatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtcacaagcaaaaaaaaaaggggggggcttatttttcatttgtggtaaccttaccagaaatattttactggcagGTATTTCATACAATGGAGCTGGGGAAAGGCCAGGACGTCACAGCAATCGCTCTAAACAAAGAGAACACAAATCTTCTACTGTCTACTGCTGATAAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT