1 5' 3' | 2 5' 3' | 3 5' 3' |
gttggattcttggaacccgttggattgaagagaaatttggtcttgtttattcccttaatcattgtgctcgttgcagGTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAGGAATCCTGTTGGTAGGGCAGTTCAGTAGGAGATAATTGCTTGCAGATTT
species | Oryza sativa |
transcript | LOC_Os04g46180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGTCTCAGTCGCTACGCTTGGTGCCCAATAATTAGCCTGGAAGCAG GTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAGEST: gi|88316772|gb|CI624214.1|CI624214
genomic: AGGGAGTCTCAGTCGCTACGCTTGGTGCCCAATAATTAGCCTGGAAGCAGgttggattct ... ctcgttgcagGTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAG
EST: AGGGAGTCTCAGTCGCTACGCTTGGTGACCAATAATTAGCCTGGAAGCAG GTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAG
genomic: AGGGAGTCTCAGTCGCTACGCTTGGTGCCCAATAATTAGCCTGGAAGCAGgttggattct ... ctcgttgcagGTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAG
ggattgaagagaaatttggtcttgtttattcccttaatcattgtgctcgttgcagGTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAGGAATCCTGTTGGTAGGGCAGTTCAGTAGGAGATAATTGCTTGCAGATTT
ccttaat putative branch site (score: 6)
ttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattcttggaacccgttggattgaagagaaatttggtcttgtttattcccttaatcattgtgctcgttgcagGTGAAGTGCTCTCCGCCTCTCCGTGCTGAAATCTGATTCTCTGGTCTCCAGGAATCCTGTTGGTAGGGCAGTTCAGTAGGAGATAATTGCTTGCAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT