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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttaaatgttgtacttagtttatggtgtccctgttgcgtttgtttgttgcacatgttctcaatcttctgctaagctagtgtcattgaaaaaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAGAACTCCTTATGGGGATATATGAGAAAGGATTTGAAAGACCTTCTCCTA

Basic information

species Oryza sativa
transcript LOC_Os04g45040.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669311|gb|CK057997.1|CK057997
EST:     GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG                         GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: gi|33675238|gb|CF303477.1|CF303477
EST:     GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG                         GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: gi|27554371|gb|CA998271.1|CA998271
EST:     CCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG                         GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: CCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: gi|33676885|gb|CF305124.1|CF305124
EST:     GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG                         GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: gi|58653489|gb|CK042169.1|CK042169
EST:     GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG                         GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: gi|58673974|gb|CK062660.1|CK062660
EST:     GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG                         GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcacatgttctcaatcttctgctaagctagtgtcattgaaaaaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAGAACTCCTTATGGGGATATATGAGAAAGGATTTGAAAGACCTTCTCCTA
                                      attgaaaaaat  TA-rich tract