1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgatatctacttctgtttcaggaatgatttgatgcctttgtatttagtggcaaagctaccaaccacatgatttaactgttgtttttggcatgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTA
species | Oryza sativa |
transcript | LOC_Os04g44560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGCAGGGAGGCAGTGGATTTGCCAGCTCTCCAAGAACTAATGGAGAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGEST: gi|29686490|gb|CB682765.1|CB682765
genomic: AGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGgtgtgccctt ... atgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTG
EST: CTAATGGAGAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGEST: gi|29686489|gb|CB682764.1|CB682764
genomic: CTAATGGAGAAGgtgtgccctt ... atgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTG
EST: GAACTAATGGAGAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGEST: gi|88725893|gb|CI747405.1|CI747405
genomic: GAACTAATGGAGAAGgtgtgccctt ... atgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTG
EST: AGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAG ACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTG
genomic: AGGGCAGGGAGGCAGTGGATTTTCCAGCTCTCCAAGAACTAATGGAGAAGgtgtgccctt ... atgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTG
tagtggcaaagctaccaaccacatgatttaactgttgtttttggcatgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTA
atttaac putative branch site (score: 38)
atgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatatctacttctgtttcaggaatgatttgatgcctttgtatttagtggcaaagctaccaaccacatgatttaactgttgtttttggcatgtattcagACAGGATTTGACATGGATGATGTAGTAAGGAAGTACATTCGATACACACTGAATGAAAAACCATTCAACCCTGATGTAGTCGTGGATCTCATACATCTTA
- - - - - - - tgtttca
- - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgat