1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcgcaaagccgggatcccatgaatttagctgcttaaatttcttcttcatgtcaatcgaaattcaaatgcaaattagtatctcattttcaaatcgattgctgcttcttgcagATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
species | Oryza sativa |
transcript | LOC_Os04g42800.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCGGAGGCTCTGGCAGCTCACTCCGGTTTACACTTCTGAATGGGCCAA ATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCEST: gi|86254973|gb|CI017093.1|CI017093
genomic: AAGCGGAGGCTCTGGCAGCTCACTCCGGTTTACACTTCTGAATGGGCCAAgtacgcgcaa ... cttcttgcagATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
EST: AAGCGGAGGCTCTGGCAGCTCACTCCGGTTTACACTTCTGAATGGGCCAA ATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCEST: gi|88980799|gb|CI022493.1|CI022493
genomic: AAGCGGAGGCTCTGGCAGCTCACTCCGGTTTACACTTCTGAATGGGCCAAgtacgcgcaa ... cttcttgcagATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
EST: CACTCCGGTTTACACTTCTGAATGGGCCAA ATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
genomic: CACTCCGGTTTACACTTCTGAATGGGCCAAgtacgcgcaa ... cttcttgcagATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
gaaattcaaatgcaaattagtatctcattttcaaatcgattgctgcttcttgcagATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
ctgcttctt CT-rich tract
aaattagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgcaaagccgggatcccatgaatttagctgcttaaatttcttcttcatgtcaatcgaaattcaaatgcaaattagtatctcattttcaaatcgattgctgcttcttgcagATGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC