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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacgaaccactcataaaatcttagtctttacaagcatgcaaaatgtgtgcagtgctataattcccaggttatcgttgatattcatgtccttgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG

Basic information

species Oryza sativa
transcript LOC_Os04g40874.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g40874.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 2
-tacgaaccactcataaaatcttagtctttacaagcatgcaaaatgtg-tgcagtgctataattcccaggt-tatcg-ttgatattcatgtccttgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG
 || |  |   ||    | |  || ||| | |     ||  | ||    || | |  |  |  |      | ||| |  |||  || || | | | ||||||||||||| |||||||| || ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||
atatgtgcagttcc---atttgtaatctgtgcggttctgtgatatacactgtaattatcaagctagtgaatgtattgactgaagttaatattcat-tgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86890781|gb|CI303972.1|CI303972
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88421242|gb|CI569087.1|CI569087
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGGATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88383894|gb|CI631784.1|CI631784
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|29663317|gb|CB659592.1|CB659592
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88338649|gb|CI644106.1|CI644106
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATC
EST: gi|88348462|gb|CI629951.1|CI629951
EST:     CTAGCCAAGAAGAAAACTTTCCCGGNCCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: CTAGCCAAGAAGAAAACTTTCCCGG-C-ACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88373258|gb|CI614594.1|CI614594
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGGTCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88411783|gb|CI571275.1|CI571275
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88313812|gb|CI597443.1|CI597443
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88449978|gb|CI572109.1|CI572109
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|58654814|gb|CK043494.1|CK043494
EST:     ACCTAGCCAAGAAGAAAACTTGCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88719764|gb|CI743274.1|CI743274
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88421660|gb|CI616985.1|CI616985
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88447483|gb|CI584598.1|CI584598
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|58611861|gb|CK039573.1|CK039573
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88388045|gb|CI590321.1|CI590321
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88765888|gb|CI774978.1|CI774978
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATC
EST: gi|88305522|gb|CI630684.1|CI630684
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88407965|gb|CI588994.1|CI588994
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88430411|gb|CI567430.1|CI567430
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88403389|gb|CI573112.1|CI573112
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88409948|gb|CI571205.1|CI571205
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88737684|gb|CI761192.1|CI761192
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|29634314|gb|CB639323.1|CB639323
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|29614696|gb|CB619709.1|CB619709
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88396043|gb|CI595591.1|CI595591
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTACATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88421686|gb|CI569067.1|CI569067
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88363986|gb|CI607296.1|CI607296
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTC-ATCTTTTTGCACAG                         GGATTTATACAACTCAG
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAA-TCAG
EST: gi|88300652|gb|CI587456.1|CI587456
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|58670061|gb|CK058747.1|CK058747
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|29680803|gb|CB677078.1|CB677078
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88417228|gb|CI576302.1|CI576302
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|29635386|gb|CB640395.1|CB640395
EST:     ACCTATCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88352601|gb|CI624540.1|CI624540
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|88363865|gb|CI607175.1|CI607175
EST:     CCTAGCCAAGAAGAAAACTTTCCCGGCACCTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: CCTAGCCAAGAAGAAAACTTTCCCGGCAC-TCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|86904132|gb|CI304566.1|CI304566
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATA
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATA
EST: gi|163920079|gb|EG712021.1|EG712021
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: gi|117243651|gb|CT843162.1|CT843162
EST:     ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG                         GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 68

CCCTTCAGAGCAAGGTTGTCTCTCTGTTATTGTCCTCGGGGCTTCTGGAGACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcagtgctataattcccaggttatcgttgatattcatgtccttgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG
                           cgttgat  putative branch site (score: 68)
                                       tgtcctt  putative PPT
          tataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacgaaccactcataaaatcttagtctttacaagcatgcaaaatgtgtgcagtgctataattcccaggttatcgttgatattcatgtccttgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACCTTTCTGATGATGGGTTAAGGGAACGCATTCGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -gaaccac
- - - - - -cataaaa
- - - - - - - - - - - - - - - - agcatgc
- - - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtcc