1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcatgtttctagctttcttcatgttggttgaggtgtttttaggtggacaaggctgttatgtcctggaatgtttcaattctgattcatcaaccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAAAGGGAAAAATCCTGTAACCCTTGACCACCTCAGTGTGAGAGGAAACAA
species | Oryza sativa |
transcript | LOC_Os04g39444.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: -GTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCG GTGTGGATATAAGCAGTGAACACCCACTTGAAGACTGTTAAGCTCACATTGEST: gi|38478446|gb|CF962579.1|CF962579
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCA-TGAACACCCACTTGAAGACTGTTAAGCTCACATTG
EST: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAEST: gi|25807609|gb|CA763570.1|CA763570
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
EST: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATTACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAEST: gi|86529917|gb|CI170123.1|CI170123
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
EST: GAACCATCACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAEST: gi|86530707|gb|CI170913.1|CI170913
genomic: GAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
EST: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAEST: gi|88589523|gb|CI705411.1|CI705411
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
EST: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAEST: gi|88212938|gb|CI210789.1|CI210789
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
EST: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAEST: gi|66922077|gb|CX108925.1|CX108925
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
EST: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCG GTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
genomic: GGTCACCATCGAGCTCAAGAACGGCACCGTCGTCCACGGAACCATCACCGgtaagctttt ... ccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGA
gacaaggctgttatgtcctggaatgtttcaattctgattcatcaaccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAAAGGGAAAAATCCTGTAACCCTTGACCACCTCAGTGTGAGAGGAAACAA
ttctgat putative branch site (score: 15)
ccttttgc putative PPT
tttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgtttctagctttcttcatgttggttgaggtgtttttaggtggacaaggctgttatgtcctggaatgtttcaattctgattcatcaaccttttgcagGTGTGGATATAAGCATGAACACCCACTTGAAGACTGTTAAGCTCACATTGAAAGGGAAAAATCCTGTAACCCTTGACCACCTCAGTGTGAGAGGAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
tcatgtt
- - - - - - - - - -catgttg
- - - - - - - - - - - - - - - - - - - - - - - - - ggctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca