1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagccgataagcagatacaacaagataccatatgctgagacatgtcgctaagattcctcccatctgcgaccagcaggaaagctgcctcactttgtttaaaaaacttttggtttcctggttgatcgatcagAGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATGAGTATGGCCCTGTCGTGGACGGGCTCCGTAGGAATCCTCAAGCTTGGCT
species | Oryza sativa |
transcript | LOC_Os04g38940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGGGAGATGAAAAGGGAGCAGGAGGAGATCATCGCCGTCCCGGACACTG AGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATGEST: gi|38474591|gb|CF958724.1|CF958724
genomic: GCGGGAGATGAAAAGGGAGCAGGAGGAGATCATCGCCGTCCCGGACACTGgtaagccgat ... gatcgatcagAGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATG
EST: GAGATCATCG-CGTCCCGGACACTG AGG--GCTGAGA-TGGCGAGA-CATGTCGCA-TACGGGCTCGAACCGCATGEST: gi|55436676|gb|CV731474.1|CV731474
genomic: GAGATCATCGCCGTCCCGGACACTGgtaagccgat ... gatcgatcagAGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATG
EST: GCGGGAGATGAAAAGGGAGCAGGAGGAGATCATCGCCGTCCCGGACACTG AGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATG
genomic: GCGGGAGATGAAAAGGGAGCAGGAGGAGATCATCGCCGTCCCGGACACTGgtaagccgat ... gatcgatcagAGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATG
ggaaagctgcctcactttgtttaaaaaacttttggtttcctggttgatcgatcagAGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATGAGTATGGCCCTGTCGTGGACGGGCTCCGTAGGAATCCTCAAGCTTGGCT
tttgtttaaaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccgataagcagatacaacaagataccatatgctgagacatgtcgctaagattcctcccatctgcgaccagcaggaaagctgcctcactttgtttaaaaaacttttggtttcctggttgatcgatcagAGGCTGCTGAGATTGGCGAGATCATGTCGCAGTACGGGCTCGAACCGCATGAGTATGGCCCTGTCGTGGACGGGCTCCGTAGGAATCCTCAAGCTTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT