1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtataataattcctcctgggactaactggctcctagttcttctcacttagtattatcagtagtacagtttactacttaaccctgtctagtctcttatgaccagccgttactgggtgattgctttctaccccgcaataagagatgagtacaatttgtctactcgtgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTGTGACCGTTGCATCCGTTGGCGATTCGCGGTGCGTCCTTGAAGCTGAGGG
species | Oryza sativa |
transcript | LOC_Os04g37660.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCGCTGGTGGCCGGGTTCGTCAAGACGGACAAGGATTTTCAAACAAGAG CCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTGEST: gi|40490361|gb|BX899888.1|BX899888
genomic: GGCGCTGGTGGCCGGGTTCGTCAAGACGGACAAGGATTTTCAAACAAGAGgtataataat ... tgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTG
EST: TGGCCGGGGTTCGTCTAAGACGGACAAGGGGATTTTCAAACAAGAG CCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTGEST: gi|27547836|gb|CA765984.2|CA765984
genomic: TGGCC-GGGTTCGTC-AAGACGGACAA--GGATTTTCAAACAAGAGgtataataat ... tgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTG
EST: ATTTTCAAACAAGAG CCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTGEST: gi|58673154|gb|CK061840.1|CK061840
genomic: ATTTTCAAACAAGAGgtataataat ... tgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTG
EST: GGCGCTGGTGGCCGGGTTCGTCAAGACGGACAAGGATTTTCAAACAAGAG CCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTG
genomic: GGCGCTGGTGGCCGGGTTCGTCAAGACGGACAAGGATTTTCAAACAAGAGgtataataat ... tgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTG
tgctttctaccccgcaataagagatgagtacaatttgtctactcgtgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTGTGACCGTTGCATCCGTTGGCGATTCGCGGTGCGTCCTTGAAGCTGAGGG
tacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataataattcctcctgggactaactggctcctagttcttctcacttagtattatcagtagtacagtttactacttaaccctgtctagtctcttatgaccagccgttactgggtgattgctttctaccccgcaataagagatgagtacaatttgtctactcgtgtgtttcagCCCATTCTTCAGGAACAACCGTGACGTTTGTCATAATCGATGGGTACGTTGTGACCGTTGCATCCGTTGGCGATTCGCGGTGCGTCCTTGAAGCTGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA