1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttcaccatacttttattatgcgacaaaacagggcggggcggcagggatggttccacccctgatagtgctgatataaacatgttcctttattttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGACTCTACCAGCTGATGAAGTTCCTCCTGAACTACCAGAGCCAGCCCTCGG
species | Oryza sativa |
transcript | LOC_Os04g36730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTG AGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGAEST: gi|58682654|gb|CK071341.1|CK071341
genomic: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTGgtgagtctcc ... attttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGA
EST: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTG AGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGAEST: gi|58655751|gb|CK044431.1|CK044431
genomic: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTGgtgagtctcc ... attttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGA
EST: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTG AGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGAEST: gi|58686558|gb|CK075245.1|CK075245
genomic: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTGgtgagtctcc ... attttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGA
EST: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTG AGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGA
genomic: AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTGgtgagtctcc ... attttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGA
gggatggttccacccctgatagtgctgatataaacatgttcctttattttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGACTCTACCAGCTGATGAAGTTCCTCCTGAACTACCAGAGCCAGCCCTCGG
tgctgat putative branch site (score: 9)
ttcctttattttgcc putative PPT
atataaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcaccatacttttattatgcgacaaaacagggcggggcggcagggatggttccacccctgatagtgctgatataaacatgttcctttattttgccagAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGACTCTACCAGCTGATGAAGTTCCTCCTGAACTACCAGAGCCAGCCCTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- ttcacca
- - - - - - - - - - - cgacaaa
- - - - - - - - - - - - - - - - - - - -gcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc