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...ttgtacaagaatttggtatattctgtgaggttgtggtattacctaaatttgtccaatagcaatttgtggtagcattcttagtttatgatgaatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGATCCACATTCAAAAGAACGACTCAAGCAATTGAATCAG
species | Oryza sativa |
transcript | LOC_Os04g35700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGAEST: gi|66924320|gb|CX111168.1|CX111168
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGAEST: gi|58695587|gb|CK084274.1|CK084274
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGAEST: gi|29629743|gb|CB634752.1|CB634752
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
aatttgtccaatagcaatttgtggtagcattcttagtttatgatgaatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGATCCACATTCAAAAGAACGACTCAAGCAATTGAATCAG
acctaaa putative branch site (score: 11)
ttagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtacaagaatttggtatattctgtgaggttgtggtattacctaaatttgtccaatagcaatttgtggtagcattcttagtttatgatgaatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGATCCACATTCAAAAGAACGACTCAAGCAATTGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - tattctg
- - - - - - - - - - - - - - - - - - - - acctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgatg