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...acccgcttggcttctcaacaatgcaaaagaccatttctctttttccttatattttgtgtaatgataagattaacctcggagacttgccactgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAGAG
species | Oryza sativa |
transcript | LOC_Os04g30760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|23514981|gb|BU673887.1|BU673887
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: -GGGG-CTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|30227133|gb|CB965025.1|CB965025
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|30227817|gb|CB965709.1|CB965709
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|23512833|gb|BU672855.1|BU672855
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|30226632|gb|CB964524.1|CB964524
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: GTGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|30227770|gb|CB965662.1|CB965662
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|30228838|gb|CB966729.1|CB966729
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|23514324|gb|BU673583.1|BU673583
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: NGTGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAEST: gi|23513544|gb|BU673187.1|BU673187
genomic: GGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
EST: NGGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAG GTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
genomic: -GGGGATTGGAAAGGCGACTGCATTGGCTCTTGGAAAAGCTGGGTGCAAGgtgagcgtca ... tgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAA
cttatattttgtgtaatgataagattaacctcggagacttgccactgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAGAG
gattaac putative branch site (score: 29)
ctgcctttc putative PPT
taatgataagattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccgcttggcttctcaacaatgcaaaagaccatttctctttttccttatattttgtgtaatgataagattaacctcggagacttgccactgcctttcagGTCCTGGTGAACTATGCCCGATCCTCAAAAGAGGCTGAAGAAGTCTCCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - ggcttct
- - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgcc