1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctgcaagatatgacttcatattatttccagtcttgtgcccctaatttatttatgtaatggtgcaagttaatccatattgcgtcatttatttgttcacagGCCAATTCTATGCTTGAGGAGGAGGTTCAATACCTTCGTGTCGCCATGGGACATGAAAGTGAATCTTTGGAAGATTTTGTGAAAGCACATGATGCATGCC
species | Oryza sativa |
transcript | LOC_Os04g28090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTTCTGTACCTGAGATTGAAGATTTTGATGAAGACGAATTAAAAGAG GCCAATTCTATGCTTGAGGAGGAGGTTCAATACCTTCGTGTCGCCATGGGA
genomic: CTCCTTCTGTACCTGAGATTGAAGATTTTGATGAAGACGAATTAAAAGAGgtaggttttc ... ttgttcacagGCCAATTCTATGCTTGAGGAGGAGGTTCAATACCTTCGTGTCGCCATGGGA
tttatttatgtaatggtgcaagttaatccatattgcgtcatttatttgttcacagGCCAATTCTATGCTTGAGGAGGAGGTTCAATACCTTCGTGTCGCCATGGGACATGAAAGTGAATCTTTGGAAGATTTTGTGAAAGCACATGATGCATGCC
agttaat putative branch site (score: 28)
tttattt putative PPT
atttatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcaagatatgacttcatattatttccagtcttgtgcccctaatttatttatgtaatggtgcaagttaatccatattgcgtcatttatttgttcacagGCCAATTCTATGCTTGAGGAGGAGGTTCAATACCTTCGTGTCGCCATGGGACATGAAAGTGAATCTTTGGAAGATTTTGTGAAAGCACATGATGCATGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
-ctgcaag
- - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgca