Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29680057|gb|CB676332.1|CB676332EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
EST:
gi|58688395|gb|CK077082.1|CK077082EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
EST:
gi|58661969|gb|CK050649.1|CK050649EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTTGCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATT-GCC
EST:
gi|88718513|gb|CI742023.1|CI742023EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCANGCTTACAG
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAG
EST:
gi|88395920|gb|CI593122.1|CI593122EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGAAGCTGCTGGGATTATTGCCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
EST:
gi|88372306|gb|CI619636.1|CI619636EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATT
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATT
EST:
gi|88312172|gb|CI582510.1|CI582510EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGAT-CCCTTGTGGCAGCTGCTGGGATTATTGCCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
EST:
gi|29635546|gb|CB640555.1|CB640555EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
EST:
gi|88740625|gb|CI764133.1|CI764133EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGG
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGG
EST:
gi|88314758|gb|CI608217.1|CI608217EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTG
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTG
EST:
gi|88388895|gb|CI592783.1|CI592783EST: CAAGAAGGATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTC-ACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTAT
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTAT
EST:
gi|88363758|gb|CI609115.1|CI609115EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAG
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAG
EST:
gi|702163|gb|D48454.1|D48454EST: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATG GCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
genomic: CAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
EST:
gi|88403001|gb|CI568775.1|CI568775EST: ACCAAGAATAACATTCGTAACATGTCTGTCACTTGCTCATGTCGACCATG GCAAGTC-ACGCTTACAGATTCC-TTGTGGCAGCTGCTGGGATTATTGCCC
genomic: AG-AAGAATAACATTCGTAACATGTCTGTCA-TTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
74 (upstream exon),
75 (downstream exon)
Score:
61GCTGCCAAGATGGTGAAGTTCACGGTTGAAGAGCTGCGCAGGATTATGGACAAGAAGAATAACATTCGTAACATGTCTGTCATTGCTCATGTCGACCATGgtatgtgcta ... ttccttgcagGCAAGTCCACGCTTACAGATTCCCTTGTGGCAGCTGCTGGGATTATTGCCCAGGAAGTTGCTGGTGATGTTCGCATGACTGATACCCGTGCAGATGAAGC
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