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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgcttaattcaactaactaattccttccttccatgctactcttactgctactgctactgtactctcactaaaatatttaccagtactagctgctacgtagtttaatttcttttctgactggctgctcttattatattatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAG

Basic information

species Oryza sativa
transcript LOC_Os03g64020.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38475301|gb|CF959434.1|CF959434
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|117243743|gb|CT843209.1|CT843209
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|218487328|gb|FG968259.1|FG968259
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|157651887|gb|EX451521.1|EX451521
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|58692378|gb|CK081065.1|CK081065
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCA
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCA
EST: gi|33801214|gb|CF326480.1|CF326480
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|58689767|gb|CK078454.1|CK078454
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTAC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTAC
EST: gi|29687940|gb|CB684215.1|CB684215
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|29687939|gb|CB684214.1|CB684214
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
EST: gi|313081134|gb|HO213720.1|HO213720
EST:     ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAG                         AAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC
genomic: ACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGgtcgcttaat ... tatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctacgtagtttaatttcttttctgactggctgctcttattatattatatgctagAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAG
                    ttctgac  putative branch site (score: 2)
                                    ttattatattatatgc  TA-rich tract