1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgggtaaatcgcctttgtcgcgaaatgaaatgaatgtcttgttctttgcttctcgccgtgtcgcgaaatgaaacaaatgtgcttcattttgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAG
species | Oryza sativa |
transcript | LOC_Os03g63400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAEST: gi|55409416|gb|CV721792.1|CV721792
genomic: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAEST: gi|8528376|gb|AU093191.1|AU093191
genomic: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: CACCGGGCGGGAAAAGGCNCCGTGCGCAG GAAGAANAAGGCCGTCCACAAGACGGGGACCCCTGACGCCAAGAGGCTGCAEST: gi|86823386|gb|CI256364.1|CI256364
genomic: CACC-GGCGGG-AAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAEST: gi|425823|gb|D22501.1|D22501
genomic: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GNAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAEST: gi|426706|gb|D22776.1|D22776
genomic: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAEST: gi|3760604|gb|C97858.1|C97858
genomic: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAEST: gi|58597162|gb|CK007690.1|CK007690
genomic: ATGAAGATGGCCGGCGCCGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
EST: CGTCCGCACCGGCGGGAAAGGCACCGTGCGCAG GAAGAAGAAGNCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
genomic: CGTCCGCACCGGCGGGAAAGGCACCGTGCGCAGgtgggtaaat ... tgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCA
tttgcttctcgccgtgtcgcgaaatgaaacaaatgtgcttcattttgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAG
cttcatttt CT-rich tract
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtaaatcgcctttgtcgcgaaatgaaatgaatgtcttgttctttgcttctcgccgtgtcgcgaaatgaaacaaatgtgcttcattttgtttgttagGAAGAAGAAGGCCGTCCACAAGACGGGGACCACTGACGACAAGAGGCTGCAGAGCACGCTCAAGAGAGTAGGTGTCAACACCATCCCCGCGATCGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG