1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaacctcgccgcccgcaatgcccgccggatttaccgccctccgtcggttgctcacgcctccccccggtggttctggtttctcagGTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGGAGAACGAGTTCAACTGGAGGGACAAGACCGACTCGCAGTATGTCGCCGA
species | Oryza sativa |
transcript | LOC_Os03g62090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGCACGCAGAACTGCCCCCAGTGCAAGAACCGCTTCAAACGCCTCAAGG GTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGGEST: gi|58674902|gb|CK063589.1|CK063589
genomic: GGGCACGCAGAACTGCCCCCAGTGCAAGACCCGCTTCAAACGCCTCAAGGgtaacctcgc ... ggtttctcagGTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGG
EST: GGGCACGCAGAACTGCCCCCAGTGCAAGACCCGCTTCAAACGCCTCAAGG GTTGCGCCCGCGTTCCCGGCGATGEST: gi|88351793|gb|CI624598.1|CI624598
genomic: GGGCACGCAGAACTGCCCCCAGTGCAAGACCCGCTTCAAACGCCTCAAGGgtaacctcgc ... ggtttctcagGTTGCGCCCGCGTCCCCGGCGATG
EST: GGGCACGCAGAACTGCCCCCAGTGCAAGACCCGCTTCAAACGCCTCAAGG GTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGG
genomic: GGGCACGCAGAACTGCCCCCAGTGCAAGACCCGCTTCAAACGCCTCAAGGgtaacctcgc ... ggtttctcagGTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGG
tttaccgccctccgtcggttgctcacgcctccccccggtggttctggtttctcagGTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGGAGAACGAGTTCAACTGGAGGGACAAGACCGACTCGCAGTATGTCGCCGA
tgctcac putative branch site (score: 8)
tttctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctcgccgcccgcaatgcccgccggatttaccgccctccgtcggttgctcacgcctccccccggtggttctggtttctcagGTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGGACGTCGACGACCTGGAGAACGAGTTCAACTGGAGGGACAAGACCGACTCGCAGTATGTCGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG