1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattattaccagatttgatcttatggacatgattgaccaatgaatattatatatgtccaacatctgttattttctgctgattggaggactgttaaacactcacttatttaatctttgatgcattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGT
species | Oryza sativa |
transcript | LOC_Os03g61810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTEST: gi|88338152|gb|CI677144.1|CI677144
genomic: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
EST: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTEST: gi|27547275|gb|CA765405.2|CA765405
genomic: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
EST: GGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTEST: gi|66916794|gb|CX103642.1|CX103642
genomic: GGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
EST: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTEST: gi|88733312|gb|CI756489.1|CI756489
genomic: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
EST: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAA-GCAGTTGAAGAAGCTTEST: gi|88587458|gb|CI705204.1|CI705204
genomic: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
EST: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTEST: gi|88588249|gb|CI706054.1|CI706054
genomic: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
EST: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAG CCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
genomic: CAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGgtattattac ... cattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTT
gctgattggaggactgttaaacactcacttatttaatctttgatgcattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGT
ttatttaatctttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattaccagatttgatcttatggacatgattgaccaatgaatattatatatgtccaacatctgttattttctgctgattggaggactgttaaacactcacttatttaatctttgatgcattaaacagCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG