Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagaacctcctcctcctccttctcgtcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtggttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g58050.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G178341_T01 (Zea mays), 3'ss of exon 2
gcaagaacctcctcctcctccttctcgtcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtggttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG
                       |  |   |  | | ||| |    |    |     ||||   |||  ||| |  ||||       |  |  | |  |||||||||||||||||| ||||| || ||||||||||| |||||||| || |||||||||||  |||||||||||||||| ||||||||||||||||||||||||
----------------------gcaagcgctgtgttttcgctctgaggaccttatcaggtctctctggtgac-gatgtgcctgacatgccggcgagt-gtgcagGGCCGGTGAGCTGACGCCTGAAGAGCTGGAGCGCCTGATGACGGTCGTGGCGAACCCTAGGCAGTTCAAGGTGCCGGACTGGTTCCTCAACAGGAAGAAG

upper sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G130544_T01 (Zea mays), 3'ss of exon 1
gcaagaacctcctcct--cctccttctcgtcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtggttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG
|||||   | |    |  |  |       |  |||||||||  |  ||  |          |  ||||||     || ||| ||| || |||      | |||||||||||| ||||| ||||| || ||||||||||| |||||||| || ||||| |||||  |||||||||||||||| ||||||||||||||||||||||||
gcaagcgtcgcgctttagctccaaggatattatcagatctctctggtgacga---------tgtggctgata--tgttgtgatgtttcggtg-----agtgtgcagGGCCGGCGAGCTGACGCCTGATGAGCTGGAGCGCCTGATGACGGTCGTGGCCAACCCTAGGCAGTTCAAGGTGCCGGACTGGTTCCTCAACAGGAAGAAG

upper sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G36610.3 (Glycine max), 3'ss of exon 2
gcaagaacctcctcctcctccttctcgtcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtggttggggagtg-cagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG
               | ||  || |  | |   ||  ||  |  || | | |   | |  |    |   |    | ||  ||     | | ||   |  || |||||| |||||| | ||  | |  ||| ||||  |  ||||||| ||||||||||||||  ||||||||||| | || ||||||||  | ||||| ||||||
--------------gtgcttttttttattggttgagttcaat--tgctcgttaattcgcacatttttgtggttattgt--tgaaattgggatttttgtttgtcagGGCTGGTGAGTTGACTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAGACTGGTTTTTGAACAGAAAGAAG

upper sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
---------------------------------------------------------------------------gcaagaacctcctcctcctccttctcg------tcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtgg---ttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                           | | ||   || ||||    |||   |      |  |      ||   | || |  |              ||   | | |  | || |||   |     ||     |  |||||| |||||||| ||  | | |||||| |||   || |||    | || || ||||| || ||||||||| | |||||||||||||||||||||||||||
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG

upper sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ25542 (Selaginella moellendorffii), 3'ss of exon 2
gcaagaacctcctcctcctccttctcgtcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtgg---ttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG
       |||    ||      |    |  |      ||   | || |  |              ||   | | |  | || |||   |     || |   |  |||||| |||||||| ||  | | |||||| |||   || |||    | || || ||||| || ||||||||| | |||||||||||||||||||||||||||
-------ccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttcgatcgaacagGGCTGGTGAGCTGACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38472230|gb|CF956361.1|CF956361
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88242905|gb|CI240756.1|CI240756
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86425496|gb|CI070593.1|CI070593
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATTAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88207825|gb|CI207674.1|CI207674
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88216998|gb|CI216702.1|CI216702
EST:     CATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: CATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|89163623|gb|CI100513.1|CI100513
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86255180|gb|CI062085.1|CI062085
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|15847697|gb|BI795973.1|BI795973
EST:     AGGTTCTCC-ACATCGCCTGCAAGAA-GCCGACATCGACATGAACAAGA-                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|15848227|gb|BI796503.1|BI796503
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86601455|gb|CI253783.1|CI253783
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86497668|gb|CI140301.1|CI140301
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88210176|gb|CI210025.1|CI210025
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAAC-ATAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86510936|gb|CI153569.1|CI153569
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86256861|gb|CI061624.1|CI061624
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86534585|gb|CI174791.1|CI174791
EST:     AGGTTCTCCTACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88244413|gb|CI243535.1|CI243535
EST:     TCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: TCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|8334693|gb|BE039677.1|BE039677
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88213714|gb|CI213563.1|CI213563
EST:     ACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: ACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86257105|gb|CI061868.1|CI061868
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88213879|gb|CI213728.1|CI213728
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87030535|gb|CI254964.1|CI254964
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86594767|gb|CI255843.1|CI255843
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88211354|gb|CI210994.1|CI210994
EST:     TCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: TCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|11233500|gb|AU164912.1|AU164912
EST:     A-GTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|89175904|gb|CI042925.1|CI042925
EST:     GGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: GGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86251352|gb|CI055485.1|CI055485
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|89185061|gb|CI049607.1|CI049607
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87038489|gb|CI193111.1|CI193111
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86432424|gb|CI086035.1|CI086035
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86421580|gb|CI057569.1|CI057569
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGT
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86254161|gb|CI058888.1|CI058888
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCGTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86421834|gb|CI059407.1|CI059407
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88206980|gb|CI206829.1|CI206829
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86507173|gb|CI149806.1|CI149806
EST:     A-GTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86423735|gb|CI062496.1|CI062496
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87025187|gb|CI265752.1|CI265752
EST:     CGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: CGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88850958|gb|CI096348.1|CI096348
EST:     AGGTTCTCCAACATCGCTTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86255166|gb|CI062071.1|CI062071
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88204660|gb|CI204509.1|CI204509
EST:     ATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: ATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86593647|gb|CI266327.1|CI266327
EST:     CCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: CCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87010356|gb|CI281246.1|CI281246
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86258123|gb|CI064476.1|CI064476
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|15847329|gb|BI795605.1|BI795605
EST:     AGGTTCTCCAACATCGCCTGCAAGAA-GCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88202419|gb|CI201281.1|CI201281
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86423153|gb|CI060726.1|CI060726
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86253869|gb|CI058596.1|CI058596
EST:     GCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: GCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|27576471|gb|CA999165.1|CA999165
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88224307|gb|CI224156.1|CI224156
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|218496587|gb|FG958559.1|FG958559
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88239589|gb|CI240066.1|CI240066
EST:     ACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: ACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86421925|gb|CI059498.1|CI059498
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86417406|gb|CI031615.1|CI031615
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86254095|gb|CI058822.1|CI058822
EST:     TCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: TCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86905236|gb|CI283200.1|CI283200
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87010491|gb|CI283566.1|CI283566
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86510455|gb|CI153088.1|CI153088
EST:     TCGCCTGCAAGAAGGCCGACATCGACGTGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: TCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|3763273|gb|AU030025.1|AU030025
EST:     AGGTTCTCCAACATCGCCTGCAAGAA-GCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86253804|gb|CI058531.1|CI058531
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88998133|gb|CI038018.1|CI038018
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86504867|gb|CI147500.1|CI147500
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86254140|gb|CI058867.1|CI058867
EST:     GCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: GCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88243811|gb|CI242933.1|CI242933
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|163918522|gb|EG713216.1|EG713216
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86594126|gb|CI262354.1|CI262354
EST:     CCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: CCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|3763405|gb|AU030157.1|AU030157
EST:     ATCGACATGAACAAGAG                         GGCCGGTGA-NTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: ATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86254810|gb|CI061121.1|CI061121
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88963446|gb|CI028462.1|CI028462
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86531909|gb|CI172115.1|CI172115
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGTCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87022336|gb|CI282288.1|CI282288
EST:     CAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: CAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88240195|gb|CI239357.1|CI239357
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|87007574|gb|CI281038.1|CI281038
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88212925|gb|CI210776.1|CI210776
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86593817|gb|CI266497.1|CI266497
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86419481|gb|CI054282.1|CI054282
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|218487671|gb|FG953694.1|FG953694
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86256479|gb|CI061242.1|CI061242
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|86424918|gb|CI063679.1|CI063679
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|88956174|gb|CI092462.1|CI092462
EST:     ATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGCGGTGGC
genomic: ATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
EST: gi|11233502|gb|AU164914.1|AU164914
EST:     AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAG                         GGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC
genomic: AGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 53 (upstream exon), 75 (downstream exon)
Score: 80

GGAAGCAGAAGATCATGTTCGCGCTCACCTCCATCAAGGGTGTCGGCCGCAGGTTCTCCAACATCGCCTGCAAGAAGGCCGACATCGACATGAACAAGAGgcaagaacct ... gggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtggttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG
             ggctgac  putative branch site (score: 80)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaagaacctcctcctcctccttctcgtcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtggttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG