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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA

Basic information

species Oryza sativa
transcript LOC_Os03g58040.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g58040.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G178415_T03 (Zea mays), 3'ss of exon 2
gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA
                                                                              | |||  |    || || ||  ||  ||| | ||| |      | |     ||   |         ||    | |||||| ||||| ||||||||||||    ||||||||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||
----------------------------------------------------------------------------acttaaccaggatcagtattttataaggttcat-ctgggctt---tcccccctatccgaaacagtatgttcaacttttgagtaacaagcagtttgtggttg----cagGTTGAATGCACAATCCCAAAAGATGATGGAACTTTGGCATCCTATGTTGGATTTAGGGTTCAACATGATAATGCTAGGGGACCTATGAAGGGTGGAATCA

upper sequence: LOC_Os03g58040.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 1
gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA
                                          ||   |    || |||| || |   |  |    |  |     ||  | |    ||| |    || |  ||||   |   ||||      || ||  | |    | | |   | | | |       ||     |  | | ||||||||||| || || || ||||||||||| || ||   ||||||||||||||| ||||| ||||| || ||||| || || || ||||| || |||||||
------------------------------------------gcaagtaaaatt-actt-cttgtgtttttcatttctttgttctggcaaaattagtttacttgttttcactgtactgt--ttca------tatagttcaccaactctagctctaaatcatgt----ttcacaat--aatgcagGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCA

upper sequence: LOC_Os03g58040.3 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA
                                                                          | ||    | |    | | ||   |  |  |   | | ||  | |  ||  ||      ||     |  |||         | |  |||   |||   |  |  ||  |||| ||||| || || |||||||| ||||| ||  ||||||| |  |||||||| || || |||||||||||||| || || || ||||| ||||||||||
--------------------------------------------------------------------------ccgacccgcttttttgtggatccagttacttcaatccggttgctgaattatataaccggaacaaaccaattt--------aaat--caaccggttctggtatttttgtagGTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCA

upper sequence: LOC_Os03g58040.3 (Oryza sativa), 3'ss of exon 2
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctc--tctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA
                                                                                             |||||      |  || ||    |    |  ||  |||     |   |  ||   ||   | | | |   | | |  |        ||| ||||| ||||| || || || ||||| ||||| ||| ||||||| | |||||| || || || |||||||||||||| || || || ||||| ||||||||||
----------------------------------------------------------------------------------------gttcgatgttttcctctgttttcttcttccatctataacagatctgcagaaccgatccggttcaagatcatttgaacggaactaaccaactattgcagGTGGAATGTACCATACCAAAAGACGATGGAACTCTAGCATCCTTTGTTGGATTCAGAGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCA

upper sequence: LOC_Os03g58040.3 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 3
gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA
                                                                  |||||||| | ||||  |||    ||  |  | |   ||  |  | || | |   | | ||   || |      |||||||   |  |     ||||              ||| |||||||| ||||| || || ||||| ||||| ||||| ||||| | |||||| || ||||| ||||| ||||||||||| || || |||||||| || ||||
------------------------------------------------------------------gtggtttc-taatga-tatgctc-agttttctcatccatgataaccgt-atgatttaccattttttgacta-tgctcttttcacttcttttgaacaaa-------------attgcagGTTGAGTGCACCATACCCAAAGACGATGGTACTTTGGCATCATTTGTTGGATTCAGGGTTCAACATGACAATGCTAGAGGCCCCATGAAGGGAGGGATCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88428464|gb|CI564932.1|CI564932
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|86904378|gb|CI308588.1|CI308588
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88733517|gb|CI756694.1|CI756694
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|33657939|gb|CF280553.1|CF280553
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88359789|gb|CI622479.1|CI622479
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|29679310|gb|CB675585.1|CB675585
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88352374|gb|CI615628.1|CI615628
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88314615|gb|CI606683.1|CI606683
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88764543|gb|CI773661.1|CI773661
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|58609006|gb|CK037039.1|CK037039
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|58686901|gb|CK075588.1|CK075588
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88453274|gb|CI565716.1|CI565716
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|66915471|gb|CX102319.1|CX102319
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88405772|gb|CI609671.1|CI609671
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88428743|gb|CI599459.1|CI599459
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88364791|gb|CI614409.1|CI614409
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88355078|gb|CI615347.1|CI615347
EST:     TGGACTCAAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88731695|gb|CI755308.1|CI755308
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88740721|gb|CI764229.1|CI764229
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|86850168|gb|CI305407.1|CI305407
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88362637|gb|CI608786.1|CI608786
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCCGAAAGATGATGGGACTTTAGCATCTTATGTTGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCC-GAAAGATGATGGGACTTTAGCATCTTATGTTGG
EST: gi|88377000|gb|CI597784.1|CI597784
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCCATCTTATGTTGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGC-ATCTTATGTTGG
EST: gi|88351099|gb|CI623321.1|CI623321
EST:     TGGACTCCAAGCTAGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88763819|gb|CI773235.1|CI773235
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|58607484|gb|CK035517.1|CK035517
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|29673988|gb|CB670263.1|CB670263
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|163920153|gb|EG712059.1|EG712059
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|29674431|gb|CB670706.1|CB670706
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|33658195|gb|CF280809.1|CF280809
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88739232|gb|CI762740.1|CI762740
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88390621|gb|CI609246.1|CI609246
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88391115|gb|CI593023.1|CI593023
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88364580|gb|CI612395.1|CI612395
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAAGTTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAA-TTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGG
EST: gi|88359878|gb|CI617789.1|CI617789
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTAATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88763881|gb|CI773297.1|CI773297
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTACCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88733039|gb|CI756216.1|CI756216
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88357487|gb|CI623541.1|CI623541
EST:     TGGACTCCAAGCTAGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88370806|gb|CI592572.1|CI592572
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88735940|gb|CI757515.1|CI757515
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88404005|gb|CI601415.1|CI601415
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|88316149|gb|CI620427.1|CI620427
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|58657687|gb|CK046367.1|CK046367
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATGCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
EST: gi|33675066|gb|CF303305.1|CF303305
EST:     TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAG                         GTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG
genomic: TGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 70 (downstream exon)
Score: 22

GTTGGCAGCGACGAGCAGGAACTTCAAGCAGGCGGCCAAGCTGCTGGGCCTGGACTCCAAGCTGGAGAAGAGCTTGCTCATCCCGTTCAGGGAGATCAAGgtgatgattc ... ttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA
                                           ggttgat  putative branch site (score: 22)
            tcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatgattctagggcagttttcttgagatctggtaacctgtgctctttggcttcacttgctcgaagtggtttcctgatgaacatgagagagaatgttgaaaaattcttgctgtgacggggttcaatggattaaagggctctctttttggtgttgagtgacaagaagtttgtggttgatttcagGTTGAATGCACAATTCCGAAAGATGATGGGACTTTAGCATCTTATGTTGGGTTTAGGGTCCAACACGACAATGCTAGGGGACCTATGAAGGGTGGAATCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA