1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtattaaagtttacaacatcacatatagatatatcaaacaaattttcttatctctaggtttcaaaaaaaaaattcttatcgctaaatgcgtaaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTCTTTCCTCGCCATTTCCCTG
species | Oryza sativa |
transcript | LOC_Os03g55850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|218505408|gb|FG953377.1|FG953377
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|119002221|gb|CU234192.1|CU234192
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: TTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|88825479|gb|CI776044.1|CI776044
genomic: TTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTEST: gi|29667854|gb|CB664129.1|CB664129
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|58591798|gb|CF990106.1|CF990106
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|86494252|gb|CI136885.1|CI136885
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|88835395|gb|CI005085.1|CI005085
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: TTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|29667853|gb|CB664128.1|CB664128
genomic: TTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|58591068|gb|CF989376.1|CF989376
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGATGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|38473864|gb|CF957996.1|CF957996
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|29626644|gb|CB631655.1|CB631655
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|568835|gb|D39684.1|D39684
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCAATCATTGCTTGTCATCCTTCGTCTCTEST: gi|58586796|gb|CF985104.1|CF985104
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCT-GTCATCCTTCGTCTCT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|66913495|gb|CX100343.1|CX100343
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|88736312|gb|CI759820.1|CI759820
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGCTGGGCTGTTCTCTCTGTCGAG GGGAGAAATCGGAAAATGGATEST: gi|88201754|gb|CI202109.1|CI202109
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGAT
EST: GGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|86496839|gb|CI139472.1|CI139472
genomic: GGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: ACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|29626645|gb|CB631656.1|CB631656
genomic: ACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|218480554|gb|FG955808.1|FG955808
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTEST: gi|88407922|gb|CI588951.1|CI588951
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAACTGGATTGCGATCATTGCTGTAATCCEST: gi|38480635|gb|CF964724.1|CF964724
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCC
EST: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAG GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
genomic: GTCCCTTACATTTTCTTTACACTGCCTGGTGGGCTGTTCTCTCTGTTGAGgtatatatgc ... taaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTT
tcttatctctaggtttcaaaaaaaaaattcttatcgctaaatgcgtaaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTCTTTCCTCGCCATTTCCCTG
cgctaaa putative branch site (score: 37)
tttcaaaaaaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaaagtttacaacatcacatatagatatatcaaacaaattttcttatctctaggtttcaaaaaaaaaattcttatcgctaaatgcgtaaattgcagGGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTCTTTCCTCGCCATTTCCCTG
- - - - - - - aacatca
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa