Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgctctctctctctctctctctcttgactatgtgttccgttgctcgttggtgtctgtggtttgttcattcgttttttttttattattattttgtttgtgtgttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g52840.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G135283_T01 (Zea mays), 3'ss of exon 2
gtacgtgctctctctctctctctctctcttgactatgtgttccgttgctcgttggtgtctgtggtttgttcattcgttttttttttattattattttgtttgtg-tgttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG
                      | | ||  |  ||  |  | | |   || ||||| |     |    ||  | || ||  ||||| ||  | |  ||||   |   | ||  ||||||| | |||||| |||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||||||||||||||||||
---------------------gtatgtcccggttactttgttc-taaatcattggtat-----gcccattgctccgcttgatttttgttgatctcgtgttctcggcatcggcggcagTGGACTAAGCAGTTGAACGCGCCGCTGGAAGAGGTCGACCCCGAGATTGCTGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG

upper sequence: LOC_Os03g52840.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA14G36280.1 (Glycine max), 3'ss of exon 2
gtacgtgctctctctctctctctctctcttgactatgtgttccgttgctcgttggtgtctgtggtttgttcattcgttttttttttattattattttgtttgtgtgttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG
    ||   |    ||     ||||| ||  || |||  |  |||||||     | ||          ||| ||| | | |  || |     ||||| ||  | | |      ||||||   |||||||| ||||  || || ||||   | |||||||||||||||||||| ||||| | ||| ||||| || |||||||||
----gtaagccaattcagatcctctcact-aaccatgcct--cgttgctttcacgcgt----------ttcgttcatatctaattca-----atttttttcttctataaatgccagTGGATAAAGCAGCTCAACGATCCTCTCGAGGCCATCGATCCCGAGATCGCCGACATAATCGAACTCGAAAAGGCGCGTCAATGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88424301|gb|CI581856.1|CI581856
EST:     GCGTCCCTGCCGGGGACGGAGGAGAGATCCGGAGTCACC                         TGCCCGAAGCAGTTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58612638|gb|CK040350.1|CK040350
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29675547|gb|CB671822.1|CB671822
EST:     CCGGAGTCACC                         TGGCCTTAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: CCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88403169|gb|CI570910.1|CI570910
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88424270|gb|CI581825.1|CI581825
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29615988|gb|CB621000.1|CB621000
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29624282|gb|CB629293.1|CB629293
EST:     GAGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58592438|gb|CF990746.1|CF990746
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCGCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58612303|gb|CK040015.1|CK040015
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29614138|gb|CB619151.1|CB619151
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29636379|gb|CB641388.1|CB641388
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29619822|gb|CB624834.1|CB624834
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29638078|gb|CB643087.1|CB643087
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88344989|gb|CI625835.1|CI625835
EST:     GCGTCCCTGCCGGCGATGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58610782|gb|CK038494.1|CK038494
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58610008|gb|CK038041.1|CK038041
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29621132|gb|CB626143.1|CB626143
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29641599|gb|CB646606.1|CB646606
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58609425|gb|CK037458.1|CK037458
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88426571|gb|CI579400.1|CI579400
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58613274|gb|CK040986.1|CK040986
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|117244508|gb|CT848411.1|CT848411
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29614628|gb|CB619641.1|CB619641
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29670801|gb|CB667076.1|CB667076
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58665373|gb|CK054059.1|CK054059
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGACCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGGC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29646105|gb|CB651112.1|CB651112
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58657072|gb|CK045752.1|CK045752
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88428580|gb|CI565048.1|CI565048
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29618931|gb|CB623943.1|CB623943
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TAGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGCGGATCCCGAGATCGC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagT-GGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGC
EST: gi|29618036|gb|CB623048.1|CB623048
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29667991|gb|CB664266.1|CB664266
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29633899|gb|CB638908.1|CB638908
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29634685|gb|CB639694.1|CB639694
EST:     GCGTCCCTGCCGGCGACGGAGGACATATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29615274|gb|CB620286.1|CB620286
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88734102|gb|CI757610.1|CI757610
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29635394|gb|CB640403.1|CB640403
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29634586|gb|CB639595.1|CB639595
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29646445|gb|CB651452.1|CB651452
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58611875|gb|CK039587.1|CK039587
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58605862|gb|CK033895.1|CK033895
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29621678|gb|CB626689.1|CB626689
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58605171|gb|CK033204.1|CK033204
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88447579|gb|CI584583.1|CI584583
EST:     GCGTCCCTGCCGGCGAGGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29634602|gb|CB639611.1|CB639611
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29678030|gb|CB674305.1|CB674305
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58695121|gb|CK083808.1|CK083808
EST:     CCCTGCCGGCGACGGAGGAGAGAT-CGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: CCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|33674867|gb|CF303106.1|CF303106
EST:     GACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88406273|gb|CI596400.1|CI596400
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29622694|gb|CB627705.1|CB627705
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58613051|gb|CK040763.1|CK040763
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGGC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88397959|gb|CI583277.1|CI583277
EST:     GCGTCCCTGCCGGCGAGGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29665918|gb|CB662193.1|CB662193
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|38471328|gb|CF955459.1|CF955459
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58654507|gb|CK043187.1|CK043187
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCG
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29630142|gb|CB635151.1|CB635151
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88826721|gb|CI777286.1|CI777286
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58606494|gb|CK034527.1|CK034527
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29613481|gb|CB618494.1|CB618494
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88745591|gb|CI768951.1|CI768951
EST:     GCGTCCCTGCCGGCGAAGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|87023586|gb|CI286337.1|CI286337
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58673445|gb|CK062131.1|CK062131
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88760569|gb|CI770125.1|CI770125
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88733450|gb|CI756627.1|CI756627
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|88398541|gb|CI595942.1|CI595942
EST:     GCGT-CCTGCCGGCGACGGAGGAGAGATTCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|86901078|gb|CI306267.1|CI306267
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|58605751|gb|CK033784.1|CK033784
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29634567|gb|CB639576.1|CB639576
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
EST: gi|29687893|gb|CB684168.1|CB684168
EST:     GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACC                         TGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC
genomic: GCGTCCCTGCCGGCGACGGAGGAGAGATCCGGAGTCACCgtacgtgctc ... ttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttgttcattcgttttttttttattattattttgtttgtgtgttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG
     tgttcattcgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtgctctctctctctctctctctcttgactatgtgttccgttgctcgttggtgtctgtggtttgttcattcgttttttttttattattattttgtttgtgtgttggatgcagTGGCCGAAGCAGCTGAACGCGCCGCTGGAGGAGGTGGATCCCGAGATCGCCGACATCATCGAGCACGAGAAGGCCCGCCAATGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG