1 5' 3' | 2 5' 3' | 3 5' 3' |
...actgagcaatccacccacgttttcgcttgcggcgcggcgttttgcatttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG
species | Oryza sativa |
transcript | LOC_Os03g52320.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG
agctgac putative branch site (score: 7)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgagcaatccacccacgttttcgcttgcggcgcggcgttttgcatttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG
- - - - -tccaccc
- - - - - - - - - - - -cgcttgc
- - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcctc