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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgagcaatccacccacgttttcgcttgcggcgcggcgttttgcatttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG

Basic information

species Oryza sativa
transcript LOC_Os03g52320.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52320.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G180246_T02 (Zea mays), 3'ss of exon 2
----------------actg-agcaatccacccacgttttcgcttgcggcgcggcgttttgcatttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG---------------
                |||| |   | | |   |  |   ||  || |||   | ||| | | | |   | || | || |||||  | ||               |||||  |||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||  |  | || |||               
gcatgctctcctggccactgcaatgaactatagatatccccgtgtgaggctgagtgttct-cgtgtctgccactgccacctcacctgatg---------------ctgtc-ttgcagGCACCAAGCTAAGCTCCAGCACAACCTCATGTACCTGGCCGCCATCGCTGACAGCCAGCCGCCACAGACCGCGCCACTATCACAGGTACGTACTGCTAAT

upper sequence: LOC_Os03g52320.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G180246_T01 (Zea mays), 3'ss of exon 2
----------------actg-agcaatccacccacgttttcgcttgcggcgcggcgttttgcatttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG
                |||| |   | | |   |  |   ||  || |||   | ||| | | | |   | || | || |||||  | ||               |||||  |||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||  |  | || |||
gcatgctctcctggccactgcaatgaactatagatatccccgtgtgaggctgagtgttct-cgtgtctgccactgccacctcacctgatg---------------ctgtc-ttgcagGCACCAAGCTAAGCTCCAGCACAACCTCATGTACCTGGCCGCCATCGCTGACAGCCAGCCGCCACAGACCGCGCCACTATCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgccctacaggcagctcacaagctgaccatcctcgcgtgtctgtcgctgcagGAACCAAGCTAAGCTCCAGCACAATCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCGCCGCAGACGGCCGCCATGTCCCAG
                       agctgac  putative branch site (score: 3)