1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgtagcaaaatgtgtttattgatgtaaattcgtaaaccattgctataactgcatagctggtgcttcttctcaactttcaactgaatttgctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACTCTGAAACGGCCGTCGGAGTCGGCACTGTCGGCTCGTCTGAGGCCATCA
species | Oryza sativa |
transcript | LOC_Os03g51080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88400383|gb|CI593458.1|CI593458
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCAGCGAACTCCAG AACTGATGTTGTGAEST: gi|88414709|gb|CI604067.1|CI604067
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGT-GTGA
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AAC-GATGTGTGAACATGATTGGACACCTCTTGAATGCEST: gi|25798330|gb|CA754291.1|CA754291
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|58612489|gb|CK040201.1|CK040201
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|29617567|gb|CB622579.1|CB622579
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88372387|gb|CI619717.1|CI619717
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTGGACATGGACGAGTACCCCGTCAGCACCGAATTC-AG AAGCGATGTGTGEST: gi|88360337|gb|CI612056.1|CI612056
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTG
EST: ACAAGAACTACGTCGATATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCCTCTTCAATGCTCCTCTEST: gi|88398239|gb|CI588127.1|CI588127
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACC-TCTTCAATGCTCCTCT
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACTGATGTGTGAAEST: gi|8336367|gb|BE040860.1|BE040860
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAA
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88425374|gb|CI567094.1|CI567094
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ATA-GAACTACGTCGACATGGACGAGTACCC-GTCACCACCGAACTC-AG AACCGATGTGTGAACEST: gi|29659446|gb|CB655721.1|CB655721
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88443538|gb|CI597005.1|CI597005
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AAC-GATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|117217697|gb|CT845092.1|CT845092
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|58687897|gb|CK076584.1|CK076584
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88400360|gb|CI593435.1|CI593435
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACTGATGTTGTGAACATGATTTGCACACCTCTTCAATEST: gi|58663096|gb|CK051782.1|CK051782
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGT-GTGAACATGATT-GCACACCTCTTCAAT
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|58692856|gb|CK081543.1|CK081543
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|2309713|gb|C25868.1|C25868
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|58663799|gb|CK052485.1|CK052485
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|29613133|gb|CB618146.1|CB618146
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|58607481|gb|CK035514.1|CK035514
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88304126|gb|CI599814.1|CI599814
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTAAGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88392957|gb|CI614839.1|CI614839
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: AAAAGAACTAGGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|88330189|gb|CI658494.1|CI658494
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCEST: gi|58667690|gb|CK056376.1|CK056376
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACEST: gi|29659019|gb|CB655294.1|CB655294
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
EST: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAG AACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
genomic: ACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtactcctcc ... ctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGAC
ataactgcatagctggtgcttcttctcaactttcaactgaatttgctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACTCTGAAACGGCCGTCGGAGTCGGCACTGTCGGCTCGTCTGAGGCCATCA
ctataac putative branch site (score: 64)
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtagcaaaatgtgtttattgatgtaaattcgtaaaccattgctataactgcatagctggtgcttcttctcaactttcaactgaatttgctgtttgcagAACCGATGTGTGAACATGATTGCACACCTCTTCAATGCTCCTCTAGGGGACTCTGAAACGGCCGTCGGAGTCGGCACTGTCGGCTCGTCTGAGGCCATCA
-tgtagca
- - - - - -tgtgttt
- - - - - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - aaaccat
- - - - - - - - - - - - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggtg