1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cctgtaagttagaaatgctattaccactttccgtaattaaagtattttctgatatttcattgtcatttttcatatctttctatcatttcttttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG
species | Oryza sativa |
transcript | LOC_Os03g50480.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAG GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGEST: gi|58675297|gb|CK063984.1|CK063984
genomic: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
EST: TGCCCTTCCTGCCGACAAAGTAAAAG GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGEST: gi|29664693|gb|CB660968.1|CB660968
genomic: TGCCCTTCCTGCCGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
EST: ACATTTAATGCCCTTCCTGCCGACAAAGTAAAAG GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGEST: gi|87015499|gb|CI303105.1|CI303105
genomic: ACATTTAATGCCCTTCCTGCCGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
EST: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAG GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGEST: gi|58590938|gb|CF989246.1|CF989246
genomic: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
EST: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAG GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCGCGAAGGATGCTGEST: gi|58667790|gb|CK056476.1|CK056476
genomic: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
EST: CGACAAAGTAAAAG GTGCAACCATTG-TGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGEST: gi|58666319|gb|CK055005.1|CK055005
genomic: CGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
EST: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAA GTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
genomic: GAACTTTGTGCAATCCACATTTAATGCCCTTCCTGCCGACAAAGTAAAAGgttagctact ... tttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTG
tttctgatatttcattgtcatttttcatatctttctatcatttcttttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG
ttctgat putative branch site (score: 120)
tcatttttcatatctt putative PPT
atttttcatatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtaagttagaaatgctattaccactttccgtaattaaagtattttctgatatttcattgtcatttttcatatctttctatcatttcttttcttacagGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT