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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtcaagttaatcaataatgaatttcggcagcttgataattgcttactttttttttctgaaagaagataattacttacattgtcttcttgctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG

Basic information

species Oryza sativa
transcript LOC_Os03g49610.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49610.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AC217401.3_FGT002 (Zea mays), 3'ss of exon 2
-gagtcaagttaatca----ataatgaatttcggcagcttgataattgcttactttttttttctgaaagaagataattacttacattgtcttcttgctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG
 ||  | |   || ||    |   |||   |    |  |   | |    ||| |   | |||||   ||     | ||   | | || ||   |     | ||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||| |
tgaaacgaacaaaacatctcacgctgagaattaataattcatttagaaattagtaactatttcttttagtctgaatttggcttctttatccctt-----gtacagGAAGATGTTGATCTCATGAAAAGCCTAAATTTTGATGCATACCGGTTTTCAATCTCCTGGTCCAGGATCTTCCCAG

upper sequence: LOC_Os03g49610.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 2
-gagtcaagttaatca-ataatgaatttcggcagcttgataattgcttactttttttttctgaaagaagataattacttacattgtcttcttgctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG
  |||  | || || | ||  | ||| |        |  |   || ||   || |   |||    |    |   | ||   ||   ||   |  |   |||||||||| | |||||| ||   ||||||||||| ||||| || ||||| |||||||||||||| || ||||| ||  
gaagtacatttgattatattgtaaatgttcattatgtattg--tgattgagttgtccctcttgttgttcttctctgctggaataaactctgtaatttgacagGAAGATATAGATCTCATGGCCAGCCTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA

upper sequence: LOC_Os03g49610.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0006g01790.t01 (Vitis vinifera), 3'ss of exon 2
--gagtcaagttaatcaataatgaatttcggcagcttgataattgcttactttttttttctgaaagaagataattacttacattgtcttcttgctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG
     ||| | || | |  | ||  ||     | | | | | |  | | |  |  ||  |  |    |  || | | ||  |||||  |          ||||||||| | ||  |  ||||||   ||||||| |||||||| || ||||| ||||| |||||||||||||||||||
aatcatcatgatattgagcattgg-ttgatatatcataacagtaccattcactagttggcctattccatttagt-atttttattgttgttacctgtttgcagGAAGATCTGGACATAATGAAAATTTTGAATTTTGATGCATACCGATTTTCCATCTCCTGGTCAAGGATTTTCCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58664486|gb|CK053172.1|CK053172
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58667486|gb|CK056172.1|CK056172
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58670861|gb|CK059547.1|CK059547
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58672531|gb|CK061217.1|CK061217
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58673207|gb|CK061893.1|CK061893
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58663907|gb|CK052593.1|CK052593
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58669775|gb|CK058461.1|CK058461
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAA
EST: gi|88360202|gb|CI610316.1|CI610316
EST:     GGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTC
genomic: GGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGC-TACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTC
EST: gi|58666291|gb|CK054977.1|CK054977
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|88395071|gb|CI609387.1|CI609387
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGT
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGT
EST: gi|58661585|gb|CK050265.1|CK050265
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGT
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGT
EST: gi|58667025|gb|CK055711.1|CK055711
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|88314532|gb|CI606600.1|CI606600
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCC
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCC
EST: gi|58662636|gb|CK051322.1|CK051322
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58672509|gb|CK061195.1|CK061195
EST:     GGGAATGCAGATGCTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: GGGAATGCAGATG-TTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|117229561|gb|CT859875.1|CT859875
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58669370|gb|CK058056.1|CK058056
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58669614|gb|CK058300.1|CK058300
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTACA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58663658|gb|CK052344.1|CK052344
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGGTACAAG                         GAAGATGTTGATCTCTTGAAAAGGCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58652616|gb|CK041296.1|CK041296
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58663559|gb|CK052245.1|CK052245
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58665742|gb|CK054428.1|CK054428
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58678605|gb|CK067292.1|CK067292
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58668553|gb|CK057239.1|CK057239
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACCAG                         GAAGATGTTGATCTCT
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCT
EST: gi|88721802|gb|CI745101.1|CI745101
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCCCTACACG                         GAAGATGTCGATCTCTTGAA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAA
EST: gi|58654026|gb|CK042706.1|CK042706
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGG-TGTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|88722284|gb|CI745794.1|CI745794
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCT
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCT
EST: gi|58675806|gb|CK064493.1|CK064493
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58665258|gb|CK053944.1|CK053944
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|88398983|gb|CI603650.1|CI603650
EST:     CGGGAAATGGGAATGCAGATGTTAATACAGATGAATATCATCGCTACAAG                         GAAGATGTTGA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGA
EST: gi|58653039|gb|CK041719.1|CK041719
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58656093|gb|CK044773.1|CK044773
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58654210|gb|CK042890.1|CK042890
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGACTATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGC
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGC
EST: gi|58670581|gb|CK059267.1|CK059267
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|58670130|gb|CK058816.1|CK058816
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
EST: gi|88729568|gb|CI751371.1|CI751371
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAACATGTNGATCTCTGGCAAAGCCTGAATTTCGATGCATATC
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATC
EST: gi|58669526|gb|CK058212.1|CK058212
EST:     CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAG                         GAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA
genomic: CGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 67 (upstream exon), 45 (downstream exon)
Score: 30

GGAATATTGCGGGAAATGGGAATGCAGATGTTACTACAGATGAATATCATCGCTACAAGgtaaatgaga ... gctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttttttttctgaaagaagataattacttacattgtcttcttgctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG
                           tacttac  putative branch site (score: 30)
                                      tcttcttgct  putative PPT
                      ataattacttacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagtcaagttaatcaataatgaatttcggcagcttgataattgcttactttttttttctgaaagaagataattacttacattgtcttcttgctagcacagGAAGATGTTGATCTCTTGAAAAGCCTGAATTTCGATGCATATCGGTTTTCAATCTCGTGGTCAAGGATTTTCCCTG

- - - - - - - - - - - - - cggcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacat