1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccatatgtgtacaaaacagggaactccattaatattttagcacttttctctgttacagaagtgctatttgctcttaacatatttaatggcttttactcagAGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGTTACTGGAGAAGTATCTGGGCCAGGTCCAGGATCTATTGAGATAGTTATT
species | Oryza sativa |
transcript | LOC_Os03g47949.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGCTCTGTACTTACTACAATACCACATGTATATCCATTTGAGGAAAG AGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGTEST: gi|58610234|gb|CK038113.1|CK038113
genomic: CGGAGCTCTGTACTTACTACAATACCACATGTATATCCATTTGAGGAAAGgtatccaact ... ttttactcagAGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGT
EST: CGGAGCTCTGTACTTACTACAATACCACATGTATATCCATTTGAGGAAAG AGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGT
genomic: CGGAGCTCTGTACTTACTACAATACCACATGTATATCCATTTGAGGAAAGgtatccaact ... ttttactcagAGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGT
ttctctgttacagaagtgctatttgctcttaacatatttaatggcttttactcagAGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGTTACTGGAGAAGTATCTGGGCCAGGTCCAGGATCTATTGAGATAGTTATT
cttttactc CT-rich tract
tcttaacatatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatatgtgtacaaaacagggaactccattaatattttagcacttttctctgttacagaagtgctatttgctcttaacatatttaatggcttttactcagAGTGCAGATGTTTAGAGAATTTATTGAGTTGGACAAAGCATCCCGAAGAGTTACTGGAGAAGTATCTGGGCCAGGTCCAGGATCTATTGAGATAGTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-catatgt
- - - - gtacaaa
- - - - - - - - - - - -ctccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt