1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatttattttcaactttgatactttcttgtgattttttatccatgtgaaaagcatgaaaaataatatatcatgatatggattattccgaaataaaaaaagGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCC
species | Oryza sativa |
transcript | LOC_Os03g47770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAG GTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACEST: gi|568905|gb|D39754.1|D39754
genomic: AACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGgtgacccccc ... ataaaaaaagGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGAC
EST: GTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAG GTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACEST: gi|11565148|gb|AU165784.1|AU165784
genomic: GTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGgtgacccccc ... ataaaaaaagGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGAC
EST: CGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAG GTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGAC
genomic: CGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGgtgacccccc ... ataaaaaaagGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGAC
tgaaaagcatgaaaaataatatatcatgatatggattattccgaaataaaaaaagGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCC
aaaaataatatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttattttcaactttgatactttcttgtgattttttatccatgtgaaaagcatgaaaaataatatatcatgatatggattattccgaaataaaaaaagGTGGGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - tgatact
- - - - - - - - - - - - - ttgtgat
- - - - - - - - - - - - - - - - - - - atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgat