1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctaatttcacagtagcatctttggacttgtttcaattgcttaccagcttgtaattattcaacagcatgtttctaatttcgcaattcacgatccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAACAG
species | Oryza sativa |
transcript | LOC_Os03g46410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGACG GCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTEST: gi|88299114|gb|CI570084.1|CI570084
genomic: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgc ... atccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
EST: ACCTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCC-TGTGCAAGATG GCATATGATCTCACAAGGGTACTGAGCTCATTT-ACTTCAAGGGATAT-CTEST: gi|88734222|gb|CI757730.1|CI757730
genomic: AC-TGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgc ... atccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
EST: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATG GCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTEST: gi|86847432|gb|CI287010.1|CI287010
genomic: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgc ... atccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
EST: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATG GCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTEST: gi|88362926|gb|CI614282.1|CI614282
genomic: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgc ... atccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
EST: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATG GCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTEST: gi|33681071|gb|CF309310.1|CF309310
genomic: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgc ... atccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
EST: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATG GCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
genomic: CACTGGTTCCGTACACCTCGGTGCTCGTAGGCATTGCCCTGTGCAAGATGgtaatttcgc ... atccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCT
agcttgtaattattcaacagcatgtttctaatttcgcaattcacgatccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAACAG
ttctaat putative branch site (score: 12)
tccctgt putative PPT
taattattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaatttcacagtagcatctttggacttgtttcaattgcttaccagcttgtaattattcaacagcatgtttctaatttcgcaattcacgatccctgtagGCATATGATCTCACAAGGGTACTGAGCTCATTTTACTTCAAGGGATATTCTTCACTGACAAAGATACAACGTGTTGAATGGAACAACAG
- - - - - cagtagc
- - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacagc