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...tgccgttgcaaatgacttttttgttaacattacttactgttctgggtttaacccatttataatatatgtgttgacataggttagtgcctcttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGGTTTGTGAGAAGGAAACTAAAACGAAGGCCTTTTCCAAGGAAGGGTTAG
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGEST: gi|29667065|gb|CB663340.1|CB663340
genomic: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACG
EST: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGEST: gi|88696094|gb|CI739669.1|CI739669
genomic: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAG
EST: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGEST: gi|58608036|gb|CK036069.1|CK036069
genomic: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAG
EST: AGATCAAGACGTGGAT-CAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGEST: gi|29645498|gb|CB650505.1|CB650505
genomic: AGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAG
EST: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGEST: gi|117216962|gb|CT845285.1|CT845285
genomic: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAG
EST: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGEST: gi|58658862|gb|CK047542.1|CK047542
genomic: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAG
EST: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAG GCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGAT
genomic: GGGACCAGATCAAGACGTGGATCCAGTCCAGCGAGATCAAGGACAAGAAGgtgagccctc ... ttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGAT
gtttaacccatttataatatatgtgttgacataggttagtgcctcttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGGTTTGTGAGAAGGAAACTAAAACGAAGGCCTTTTCCAAGGAAGGGTTAG
tgttgac putative branch site (score: 30)
tgcctctt putative PPT
atttataatatatgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccgttgcaaatgacttttttgttaacattacttactgttctgggtttaacccatttataatatatgtgttgacataggttagtgcctcttatgagcagGCTCTTATGGATGCCCGAAAGCAGATTGAACGCGAGATGGAACGATTTAAGGTTTGTGAGAAGGAAACTAAAACGAAGGCCTTTTCCAAGGAAGGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-gccgttg
- - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcctc