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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

Basic information

species Oryza sativa
transcript LOC_Os03g40180.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AC212184.3_FGT010 (Zea mays), 3'ss of exon 1
-gggtgctcccatttatttaccaa-tttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactat-ttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
 |  ||||    |    ||    | ||||| | || |   ||| |  ||  || |     |||  || || |       ||| || | || |    || |||| ||||||| || |||| |||||||||||| |||||||| |||||||||||  |||||||| |||||||||| ||||| || |||||||||||||||||||
agtatgctatgttaggcttgtttactttattttatta---ttgcagtttgagtacctatgtcatgattttatttgatgttatgttctggtaattcatcttcagAGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAATCCAAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G302876_T01 (Zea mays), 3'ss of exon 4
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactat-ttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
    |    | |     ||||  |   |||  || |     | | ||  || |     |||  || || |       | | |||| || |    || | ||||||||||  | |||| |||||||||||||| |||||| |||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||
attaggagtcttgagggtacccctaattatggtccccgacaagt-ttgagtacctatgtcatgattttatttgatgttgtgttgtggtaattcatctttagGGTTATGTTATGTACCTTGTCCGTGTGAGGCATGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
-----gggtgctcccatttatttaccaatttatataatcaca-tttgaatattt-tgtcctgtaatcaaaatattgtgcttaactat-ttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
      | |        || ||| |    |  || |||  || ||||| ||| | |||||||        || ||||       | | |||| || |    || |||||| ||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
tagtatgctatgttgccttgtttgcttcatcttacaattgcagtttgagtatatatgtcctg--------attttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 2
---gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
        |||  | || | |    | | ||  | |   | | |   | | ||     |     |  |  || |  | |   ||    ||||  |||  |||||| ||||| ||||||||||||||||| | |||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
atgaacaactcgtacttgtctgagtaataatgca-ttgaactagttcactctgaaaatttgagtagttgctgggtctgaacgttg--tgttatttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G466136_T01 (Zea mays), 3'ss of exon 1
-gggtgctcccatttatttaccaa-tttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactat-ttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
 |  ||||    |    ||    | ||||| | || |   ||| |  ||  || |     |||  || || |       ||| |||| || |  | || |||||||||||| || |||| |||||||||||| ||||||||||||||||||||  |||||||| |||||||||| |||||||| |||||||||||||||||||
agtatgctatgttaggcttgtttactttattttatta---ttgcagtttgagtacctatgtcatgattttatttgatgttatgttgtggtaatttatcttcagGGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGCAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgt--cgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
 | |  |  || || |      | | |    ||   | |||    | |  | || | | | |  |    |  | || | | | |  |  ||  |||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||
-gatagtttcagttttgagtagaatgaacagattgtacttgtcagtgtaatgctttgaactagttcac-tattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
gggtgctcccatttatttaccaatttatataatcacatt---tgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
    |||   | || | |   |||  ||  ||| || ||   |  | | || |    |             | |  | |  |  |   ||||  |||  |||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
aacagcttgtacttgtctgt-aatgcattgaattactttgctttgaaaattcgagtagctgctgggtgcccgggtctga--accttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgt--cgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC-----------------------------
                               ||   | |||    | |  | || | | | |  |    |  | || | | | |  |  ||  |||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||                             
------------------------------gattgtacttgtcagtgtaatgctttgaactagttcac-tattaaattgtctctgactctatatttgttcagggttatgttgtttaccgtgtccgtgttagGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCCAGCTCAAGTTCCAGAGGAACAAGAGGTCT

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 2
gggtgctcccatttatt--taccaatttatataatcacatttgaatattt-tgtcctg--taatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
   |||     |  |||  || ||| |     | ||    | || |||||    | ||  | ||   ||| |||   || | |||       || | ||||  ||||||||||| |||||||||| |||||  |  | |||||| ||||||| ||||| || || |||||||| || || |||||||   |||| ||| | || |
---tgcctttgtccattactatcaactgggccagtcctggtagagtatttgcaccttgcttcatttgaatcttgattttgattatgatcttgtaacattcc--agGGTTATGTGATTTACCGTGTTCGTGTACGAAGGGGTGGCCGGAAGAGACCAGTTCCAAAAGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatc--aaaatattgtgcttaactatttgt--cgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
    | |       |  ||   |    |    | |   ||||||  ||| |  | || ||  ||| | |  | |  | ||| |||    |||    |   |||||| | ||| || |||||||| |||||||| ||||||||  | |||||||||||||| ||||||||||| || || ||||| |   |||||||  | || |
----gttagtggagaaatatggaagcgttgtttgatgattgaatcatttttaatctagtctcaaattctgttacaaatctagttgagatgttgatgtatgtcagGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACAC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtc-ctgtaatcaaaatattgtgcttaactatttgt---cgttacc--tttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
   || |    | | |||||   |||   |  |     |  | ||||| ||| ||| |     ||||||    ||||     |||    |||| |  | |  ||||||||||||| | || ||||| ||||| || || ||||| |||||||||||||| || ||||||||||| || || |||||||   |||| ||| |||| |
---tgattt--tctgtttacatttttccctgctggtgctcta-tatttagtcactgcagcgttaatattcatattaatatcgtgtacatgttaacaatcttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttac-------ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
      ||  ||   | |  | ||  |  |   |   ||  ||| | |   |||| |||     |  | |   ||   |  || |  |         || |  ||||||||||||| |||| ||||| ||||| || ||||||||  |||||||||| ||||||||||| ||||| || || |||||||   |||| ||| | ||||
------tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggt-tgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EDP06755 (Chlamydomonas reinhardtii), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCA---GGAAGAGGCCAGTGCCCAA---GGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
           |  | |   |    | |  |    |  |||| | |    |||   |||     |  |     ||| | |   |  ||  |||   |    |     | || ||| |    |  ||||  |  |||  ||    |  || ||| |  | |||   | | |  |||   |   |||       ||       |    
----------gtaaagtcggcggaat-tgcagctcctcttgattttccactcccacaatgctcctgctaatgctaaatgtcactttttttcttgttttgcagG-GCATTGTCTACGGCAAGCCCGTGAACCAGGGTATCACCCAGCTGAAGCCCGCCCGCAACCTGCGCAACGTCGCTGAGGAGCGTGCTGGCCGCAAGTGCG---

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 3'ss of exon 2
gggtgctcccatttatttaccaat-ttatataatcacatttga--atattttgtcctgtaatcaaaatattgtgcttaactat--ttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
         |||    |  ||||  ||| ||| | || |   |   |||||  |  |   ||   | | |  | || |  |||  | || ||   |||   | ||||||||||||| || || ||||| ||| | ||||| |||||||||||||||||  ||||||||||||| || || ||||| ||| |||| ||||| || |
-----tcaacatcagctcgccaaggttaaatatttacttaacatggtatttgttgattccatgcgattctaattctgacatatcatcgttgtggtcttgttttagGGTTATGTGGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCTAAGAACCAAGGTATTACAC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 3'ss of exon 2
-gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatt-tgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
    ||   | || | ||||     | || |    |   || |  ||||       | |      |  |   ||| ||  |  |||| ||| |||   | |||| |||||||| ||||||||||| ||  | ||||| |||||||||||||||||| | ||||||||||| || || || || ||| |||||||||| || |
gtcatgactctatctttttagggcatcatttcga-attcttcataatttcaagtgtttactcctgttctactcttgacattggtgtcattatcttgtgt-agGGATATGTGGTGTACCGTGTCCGCGTTCGCCGTGGAGGCAGGAAGAGGCCAGTGGCGAAGGGTATTGTGTATGGAAAACCTAAGAACCAGGGTATTACAC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S28_15V6.1 (Physcomitrella patens), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcc----tgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
   ||||  || |  || |  ||  || ||  ||    |||  | | |  | |    | |  |       |||    | | ||||| | ||    ||   |||||| || ||||| |||||||| |||||| | ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||| ||| |||||||||| || |
--ctgctgtcagtc-ttgagtaaaatacattctcttgcttgtttgtctccttcaatttcttgtggggtacttggagctgattatttct-gtgtgtttgtatcagGGCTACGTGGTGTACCGTGTTCGTGTGCGCCGTGGAGGCAGGAAGAGGCCTGTTGCTAAGGGTATTGTGTACGGAAAGCCAAAGAACCAGGGTATTACAC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 2
---gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
   | |   | |  | || |||    |  ||  | ||| |   || |  |  ||  |    |   ||  || |     | |||   |  |  ||||   | |||| ||||| || || || ||||| ||| | ||||| |||||||||||||||||  ||||||||||||| || || ||||||||| |||| ||||| || |
cacgtggcgttcagtatagttattg-tggattgattcagaaaggatttgtgggttatccgcttcgaagcttttaac--attatgatttatggccttattttagGGCTATGTTGTGTATCGCGTCCGCGTGCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAAGGTATTACGC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcc-tgtaat----caaaatattgtgcttaactatttgtcgttaccttt--cctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
      |   | || || | ||   |   |  |    |      ||| | ||| | | ||      | || |   | ||  |   |  |  |   | |   |  ||||| |||||||| ||||||||||||||  | ||||| |||||||||||||||||  ||||||||||||| || || ||||||||| |||||||||| || |
------ttatactt-ttcagcacccttgttgttagggtgcctggattctatccatatgatatgtttagatgtctagattttcggatgataatggacctcaactgcagGGATATGTGGTCTACCGTGTCCGTGTCCGCCGTGGAGGCAGGAAGAGGCCAGTTGCCAAGGGTATTGTGTATGGAAAGCCCAAGAACCAGGGTATTACGC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
                                | | ||||     |||  || |||   | |  | ||    | | |  || ||  |    |   | ||||| || || || ||||||||||||||| | || || ||| | |||||||||||  ||||||| |||||||| || ||||||||| |||||||||||||||
-------------------------------gtaaaatttct-cctttcttcgtgtgtgctagctctt----tgatcgtttcgtgctcgaatcctcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTCTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

upper sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 2
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
                                | | ||||     |||  || |||   | |  | ||    | | |  || ||  |    |   | ||||| || || || ||||||||||||||| | || || ||| | |||||||||||  ||||||| |||||||| || ||||||||| |||||||||||||||
-------------------------------gtaaaatttct-cctttcttcgtgtgtgctagctctt----tgatcgtttcgtgctcgaatcctcacagGGATACGTTGTCTACCGTGTCCGTGTGCGTCGCGGGGGCCGAAAGAGGCCAGTTTCCAAGGGAATTGTCTATGGAAAGCCCAAGAACCAGGGTATCACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86256825|gb|CI061588.1|CI061588
EST:     CCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: CCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86252426|gb|CI056163.1|CI056163
EST:     AGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: AGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|29658085|gb|CB654360.1|CB654360
EST:     ACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: ACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|8528007|gb|AU092822.1|AU092822
EST:     CCACCCGCCCCGACAAGGCCCCGCCGCCTCGGCTTACAAGGCCAAGCCAG                         GGTTATGTGGTTTACCGTGTCCCGTTTGAGGCGTGGTGGCAGGAAGAGGC
genomic: CCACCCGCCCCGACAAGG-CCCGCCGCCTCGGC-TACAAGGCCAAG-CAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGT-CCGTGTGAGGCGTGGTGGCAGGAAGAGGC
EST: gi|88213197|gb|CI213046.1|CI213046
EST:     ACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: ACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|55411525|gb|CV723901.1|CV723901
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|29624514|gb|CB629525.1|CB629525
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86822956|gb|CI251961.1|CI251961
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86855000|gb|CI263067.1|CI263067
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87026615|gb|CI254721.1|CI254721
EST:     CCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACCAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: CCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTA-CAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86593230|gb|CI255692.1|CI255692
EST:     CAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: CAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|29658086|gb|CB654361.1|CB654361
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87013370|gb|CI265468.1|CI265468
EST:     AGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: AGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|38478414|gb|CF962547.1|CF962547
EST:     GCCCCA-CCGCCCCGACAAGGCCCGCCGCCTCGGCTACAATGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87014990|gb|CI271589.1|CI271589
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|58693675|gb|CK082362.1|CK082362
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86601727|gb|CI256232.1|CI256232
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|13806988|gb|AU181763.1|AU181763
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86495046|gb|CI137679.1|CI137679
EST:     TACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: TACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87020225|gb|CI261089.1|CI261089
EST:     GCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|8528270|gb|AU093085.1|AU093085
EST:     GCCCCACCGGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGT-AGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|218493933|gb|FG950646.1|FG950646
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|29624512|gb|CB629523.1|CB629523
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|58681581|gb|CK070268.1|CK070268
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87020526|gb|CI263389.1|CI263389
EST:     AGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: AGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87031345|gb|CI261719.1|CI261719
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|58668666|gb|CK057352.1|CK057352
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|86602240|gb|CI262709.1|CI262709
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|87016619|gb|CI275621.1|CI275621
EST:     GCCGCCTCGGCTACAAGCCCAAGCAG                         GGTTATGTGGTTAACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
EST: gi|29658150|gb|CB654425.1|CB654425
EST:     GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA
genomic: GCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgttacctccc ... ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC
                         gcttaac  putative branch site (score: 3)
                                      tcgttacctttcctc  putative PPT
        tgtaatcaaaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttacctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

- -tgctccc
- - - - - - - - - - - - - - - - - acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa