Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatcatcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG

Basic information

species Oryza sativa
transcript LOC_Os03g37970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 2
-------------------agctagcat-aaccacagcaaatatgtttgcgcccgcttttt----tcaccttatatgtgtgcattcttatgacaatcatcctttttttttc-------ttttgttgta-----cagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
                    | |    | || |     |   || | || |   |  ||||    | |    ||  |  ||  ||  ||| |   | |   ||  || ||        | ||| ||||     ||||||| |||||||| ||||||||||| |||||| | || ||| |||| |||||| |||||||||| ||  | ||||||||||| |||||||||||   |||
gtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
-----------------------------------------agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatc--atcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
                                         |  || | |            | |      |  |      || |  |  |||   ||  | ||| | |   |   |    ||  | ||  | | || | ||||||| |||||||| ||||||||||| |||||| | || ||  |||| |||||  | |||||||| ||  | ||||||||||| |||||||||||   |||
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 3'ss of exon 2
agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatcatcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
 | ||| |  |  |  |  || |  | ||     |   | ||  | || || || | || |   ||  |  |    ||| || | |  | |  |  |||||  | || ||||||||||||||||||||||| || ||||| ||||| ||||| || ||  |||| ||  | || ||| | |||||||||||||||   ||
-gttagtagtagtaatgtcaacacttctgatattgtcatgttt-cgttttaagtttacactacaatctctttgggtcttattatgttatgttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 2
agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatg-tgtgcattcttatgacaatcatcctttttttttcttttgttgta-cagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
               || |||  | | | |     ||  ||| |     | || | |  ||| | ||        |   |||| | |  | |||| |  ||||| | |||||||||||||||||||||||||| || || || ||||| ||||| |||||  |||||||  | || ||  | ||||||||||||||    ||
------------gttagtaaa-gtctctacattttctactttaaatgattttgctcttaattttaatagtgtatgtttcttttgtgtgatgtgttttctcagCTAGACAGAAGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGTCAGACACTTAAGTACAACATGAAAGTTAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 3'ss of exon 1
agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatcatcctttttttttcttttgttgta--cagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
  |  |  | |      | | | | |||          | ||      || ||     ||| | |      | |   |  |||||  |       |   ||||| | |||||||| ||||||||||| ||||| ||||| ||   ||| || ||||| ||  |||||||  | |||||||||||||||||||||||    ||
-tcatgtttgattttgtccagtct-tttatattttgaatatttgtaccatgtgatgctattttaactgagcttaaattggtttttcatgaaaccatctccagCTAGACAGAAGAAAGCTGTGAAGATTTTCCCTCGCCCCACTGTTGGACCACTTCGCCCACTTGTTCATGGACAAACTTTGAAGTACAACATGAAAGTCAG

upper sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatcatcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
                                                  |  |||  |   || |   | | |||||           || |   || | ||   ||||| |  |||||        | | | || |    |  | ||||| | || ||||||||||||||||||||||| || || || ||||| || |||||||| ||||| ||  | |||||| |||||||||| |||||    ||
gtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagt-tggtcataatgattctgtttcattatcaagcttgcttattctgtgctcgcattttcttgaca--------tgtctgttataccatc-tccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88689979|gb|CI734058.1|CI734058
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|218504140|gb|FG945016.1|FG945016
EST:     CCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: CCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|33659313|gb|CF281926.1|CF281926
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88689101|gb|CI732677.1|CI732677
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|5667188|gb|AU077448.1|AU077448
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|4878731|gb|AU063030.1|AU063030
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88688401|gb|CI731977.1|CI731977
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|38469727|gb|CF953858.1|CF953858
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88690195|gb|CI734274.1|CI734274
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88690647|gb|CI734726.1|CI734726
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88689939|gb|CI734018.1|CI734018
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88688856|gb|CI732432.1|CI732432
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88688758|gb|CI732334.1|CI732334
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88691462|gb|CI733540.1|CI733540
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88688925|gb|CI732501.1|CI732501
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88675804|gb|CI729376.1|CI729376
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCCT
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCC-T
EST: gi|58684332|gb|CK073019.1|CK073019
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|117249973|gb|CT863480.1|CT863480
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88691639|gb|CI733717.1|CI733717
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58597198|gb|CK007726.1|CK007726
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATNG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|218487161|gb|FG950548.1|FG950548
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|38471417|gb|CF955548.1|CF955548
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|325494550|gb|JG459074.1|JG459074
EST:     TGTCAAGACATGGTTCAACCAGCCCGACCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCT
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCT
EST: gi|32948297|gb|BP184869.1|BP184869
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88689102|gb|CI732678.1|CI732678
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58675597|gb|CK064284.1|CK064284
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88313010|gb|CI592294.1|CI592294
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58684746|gb|CK073433.1|CK073433
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88689114|gb|CI732690.1|CI732690
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88690134|gb|CI734213.1|CI734213
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58695028|gb|CK083715.1|CK083715
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|33659164|gb|CF281777.1|CF281777
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58602404|gb|CK012932.1|CK012932
EST:     GCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: GCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58591613|gb|CF989921.1|CF989921
EST:     GTCAAGACATTGTTCAACCAGCCCGCCCGCAAGCAGAGTGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: GTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAG-GCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|218482999|gb|FG956127.1|FG956127
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|88690325|gb|CI734404.1|CI734404
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTG                         CTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
EST: gi|58586914|gb|CF985222.1|CF985222
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATGG                         GTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 75 (downstream exon)
Score: 130

CACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccc ... tgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatatgtgtgcattcttatgacaatcatcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG
                          tcatcctttttttttc  CT-rich tract
                                tttttttttcttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agctagcataaccacagcaaatatgtttgcgcccgcttttttcaccttatatgtgtgcattcttatgacaatcatcctttttttttcttttgttgtacagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
-gctagca
- - - - - - - cagcaaa
- - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - gcccgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc