Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttgtgctcctttgttttgtttgatgtcttcagatcaacttttatttactatatgtgccatcttgcagTTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAAAA

Basic information

species Oryza sativa
transcript LOC_Os03g36790.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12623091|gb|AU173304.1|AU173304
EST:     TTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAG                         TTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA
genomic: TTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAGgtaatgttgt ... catcttgcagTTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA
EST: gi|38472127|gb|CF956258.1|CF956258
EST:     TTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAG                         TTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA
genomic: TTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAGgtaatgttgt ... catcttgcagTTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA
EST: gi|218497390|gb|FG957738.1|FG957738
EST:     TTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAG                         TTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA
genomic: TTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAGgtaatgttgt ... catcttgcagTTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA
EST: gi|58597378|gb|CK007906.1|CK007906
EST:     TGGACTACCCAGAAGGTTTTCCATCTAGATGAACTTTGTTGTAAACGGAG                         TTCGTGCTGTCGTGTTTGGATTTCATGCGCGAGTGTTCCTTTTTCAAACAA
genomic: TGGACTACCCAGAAGGTTTTCCATCT-GATGAACTTTGTTGTAAACGGAGgtaatgttgt ... catcttgcagTTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgtttgatgtcttcagatcaacttttatttactatatgtgccatcttgcagTTCGTGCTGTCGTGTTTGGATTTCATGCTCAAGTGTTCCTTTTTCAAACAAAA
     gtttgat  putative branch site (score: 5)
                                            ccatctt  putative PPT
                    atcaacttttatttac  TA-rich tract